Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 1.0e-27 126.3 79 100.0
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 1.0e-19 99.8 78 59.0
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 1.1e-18 96.3 78 55.1
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.9e-18 95.5 77 57.1
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 4.3e-18 94.4 78 52.6
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 1.3e-17 92.8 79 53.2
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 1.3e-17 92.8 75 57.3
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 1.3e-17 92.8 78 52.6
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 2.1e-17 92.0 78 52.6
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 2.8e-17 91.7 78 53.8
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 2.8e-17 91.7 75 52.0
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 3.6e-17 91.3 78 51.3
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 3.6e-17 91.3 79 50.6
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 3.6e-17 91.3 78 52.6
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 3.6e-17 91.3 79 54.4
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.8e-17 90.9 78 52.6
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 4.8e-17 90.9 78 52.6
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 4.8e-17 90.9 78 51.3
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 6.2e-17 90.5 77 51.9
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 8.1e-17 90.1 78 51.3
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 8.1e-17 90.1 74 56.8
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 1.1e-16 89.7 79 53.2
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 1.1e-16 89.7 79 53.2
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.4e-16 89.4 71 57.7
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 1.4e-16 89.4 78 51.3
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 1.4e-16 89.4 80 52.5
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 1.4e-16 89.4 78 53.8
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.8e-16 89.0 78 52.6
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 1.8e-16 89.0 79 53.2
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 2.4e-16 88.6 76 52.6
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 2.4e-16 88.6 78 53.8
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 3.1e-16 88.2 77 50.6
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 3.1e-16 88.2 78 52.6
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 3.1e-16 88.2 76 52.6
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 79 53.2
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 79 53.2
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 79 53.2
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 79 53.2
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 76 52.6
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 76 52.6
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.1e-16 88.2 76 52.6
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 4.0e-16 87.8 78 52.6
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 4.0e-16 87.8 78 51.3
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 4.0e-16 87.8 78 51.3
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 4.0e-16 87.8 78 53.8
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 5.3e-16 87.4 78 53.8
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.3e-16 87.4 78 53.8
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.3e-16 87.4 76 51.3
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 5.3e-16 87.4 79 50.6
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 6.9e-16 87.0 76 50.0
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 6.9e-16 87.0 76 52.6
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 6.9e-16 87.0 78 50.0
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 6.9e-16 87.0 79 51.9
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 6.9e-16 87.0 78 50.0
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 6.9e-16 87.0 77 51.9
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 9.0e-16 86.7 76 51.3
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 9.0e-16 86.7 77 49.4
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 9.0e-16 86.7 78 52.6
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 9.0e-16 86.7 78 52.6
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 9.0e-16 86.7 78 52.6
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 9.0e-16 86.7 78 51.3
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 9.0e-16 86.7 82 48.8
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 9.0e-16 86.7 77 51.9
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 9.0e-16 86.7 79 50.6
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.2e-15 86.3 77 54.5
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.2e-15 86.3 77 49.4
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 1.2e-15 86.3 76 52.6
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 1.5e-15 85.9 77 51.9
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 2.0e-15 85.5 78 47.4
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 2.0e-15 85.5 77 49.4
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 2.6e-15 85.1 78 50.0
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 2.6e-15 85.1 79 49.4
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.6e-15 85.1 76 48.7
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 2.6e-15 85.1 78 50.0
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 3.4e-15 84.7 75 49.3
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 3.4e-15 84.7 77 51.9
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 4.5e-15 84.3 78 51.3
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 4.5e-15 84.3 77 49.4
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 5.8e-15 84.0 78 50.0
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 7.6e-15 83.6 69 53.6
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 9.9e-15 83.2 78 47.4
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 9.9e-15 83.2 76 52.6
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 9.9e-15 83.2 76 50.0
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.3e-14 82.8 82 48.8
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 1.3e-14 82.8 79 46.8
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 1.3e-14 82.8 77 49.4
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 1.7e-14 82.4 75 49.3
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 2.2e-14 82.0 78 67.9
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 2.9e-14 81.6 78 46.2
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 3.8e-14 81.3 83 50.6
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 3.8e-14 81.3 79 46.8
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 3.8e-14 81.3 77 50.6
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.9e-14 80.9 76 47.4
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 4.9e-14 80.9 76 47.4
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 6.4e-14 80.5 76 47.4
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 6.4e-14 80.5 75 52.0
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 6.4e-14 80.5 78 46.2
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 6.4e-14 80.5 78 44.9
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 6.4e-14 80.5 77 50.6
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 8.4e-14 80.1 78 43.6
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.4e-13 79.3 78 47.4
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 1.4e-13 79.3 78 50.0
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 1.9e-13 79.0 79 51.9
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 1.9e-13 79.0 78 46.2
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.9e-13 79.0 78 44.9
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 1.9e-13 79.0 75 48.0
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.9e-13 79.0 77 49.4
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.4e-13 78.6 74 47.3
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.4e-13 78.6 74 47.3
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 3.2e-13 78.2 76 48.7
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 3.2e-13 78.2 78 47.4
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 4.2e-13 77.8 77 76.6
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 4.2e-13 77.8 75 48.0
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 5.4e-13 77.4 78 47.4
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 5.4e-13 77.4 79 48.1
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 5.4e-13 77.4 70 52.9
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 5.4e-13 77.4 76 47.4
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 7.1e-13 77.0 79 57.0
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 7.1e-13 77.0 77 48.1
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 7.1e-13 77.0 76 44.7
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 9.3e-13 76.6 78 53.8
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 1.2e-12 76.3 75 48.0
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 1.6e-12 75.9 81 67.9
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 1.6e-12 75.9 97 46.4
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 2.7e-12 75.1 83 49.4
PGSC0003DMG401021955 Solanum tuberosum HOM05D004379 ORTHO05D005186 2.7e-12 75.1 72 50.0
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 3.5e-12 74.7 72 48.6
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 6.0e-12 73.9 78 44.9
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 6.0e-12 73.9 72 50.0
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 7.9e-12 73.6 78 43.6
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.0e-11 73.2 76 44.7
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.3e-11 72.8 68 47.1
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.3e-11 72.8 82 39.0
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 1.8e-11 72.4 67 52.2
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 2.3e-11 72.0 74 48.6
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.3e-11 72.0 71 45.1
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.3e-11 72.0 71 45.1
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 3.9e-11 71.2 72 47.2
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 5.1e-11 70.9 75 45.3
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 6.7e-11 70.5 82 37.8
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 6.7e-11 70.5 77 49.4
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 6.7e-11 70.5 77 42.9
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 1.1e-10 69.7 75 42.7
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 1.1e-10 69.7 77 42.9
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 5.6e-10 67.4 71 43.7
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 5.6e-10 67.4 77 40.3
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 9.6e-10 66.6 77 40.3
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 2.4e-08 62.0 65 43.1
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 3.1e-08 61.6 74 40.5
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 6.9e-08 60.5 72 38.9
Sopen08g006200 Solanum pennellii HOM05D004379 ORTHO05D005186 6.9e-08 60.5 64 46.9
Psat4g038120 Pisum sativum HOM05D018984 ORTHO05D020974 9.0e-08 60.1 32 75.0
Medtr4g037115 Medicago truncatula HOM05D002122 ORTHO05D002205 5.8e-07 57.4 71 38.0
TWI75G1822 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 5.8e-07 57.4 35 62.9
PSO339G4098 Papaver somniferum HOM05D004379 ORTHO05D005186 9.9e-07 56.6 69 39.1
Hma1.2p1_1637F.1_g294910 Hydrangea macrophylla HOM05D002122 ORTHO05D002205 1.7e-06 55.8 71 39.4
Aqoxy6G00752 Aquilegia oxysepala HOM05D001149 ORTHO05D000970 2.9e-06 55.1 80 37.5
Duzib041G0175 Durio zibethinus HOM05D001149 ORTHO05D000970 2.9e-06 55.1 74 37.8
Sopen07g004100 Solanum pennellii HOM05D054783 ORTHO05D051282 2.9e-06 55.1 31 71.0
Manes.12G132000 Manihot esculenta HOM05D001149 ORTHO05D000970 3.8e-06 54.7 82 35.4
Glyma.18G015900 Glycine max HOM05D001149 ORTHO05D000970 6.4e-06 53.9 77 36.4
Nn1g05412 Nelumbo nucifera HOM05D001149 ORTHO05D000970 6.4e-06 53.9 83 33.7
Rhsim04G0197600 Rhododendron simsii HOM05D002122 ORTHO05D002205 6.4e-06 53.9 78 37.2
VMungo1383G0952 Vigna mungo HOM05D001149 ORTHO05D000970 6.4e-06 53.9 78 34.6
MSTRG.3492 Avicennia marina HOM05D001149 ORTHO05D000970 8.4e-06 53.5 71 38.0
PGSC0003DMG400016161 Solanum tuberosum HOM05D001149 ORTHO05D000970 8.4e-06 53.5 84 34.5


User provided reference genes

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