Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 1.7e-52 209.1 110 100.0
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 5.4e-11 71.2 60 66.7
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 2.1e-10 69.3 52 73.1
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.1e-10 69.3 52 73.1
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.7e-10 68.9 52 71.2
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.7e-10 68.9 52 71.2
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 3.5e-10 68.6 52 71.2
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 4.6e-10 68.2 107 46.7
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 7.8e-10 67.4 53 71.7
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 1.7e-09 66.2 74 55.4
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 1.7e-09 66.2 107 44.9
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 1.7e-09 66.2 73 56.2
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 2.3e-09 65.9 92 50.0
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 2.3e-09 65.9 72 59.7
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 2.3e-09 65.9 72 59.7
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 2.3e-09 65.9 72 59.7
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 3.9e-09 65.1 58 58.6
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 3.9e-09 65.1 46 71.7
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 5.1e-09 64.7 41 78.0
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 5.1e-09 64.7 80 53.8
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 5.1e-09 64.7 70 60.0
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 8.7e-09 63.9 41 78.0
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 8.7e-09 63.9 48 70.8
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 1.1e-08 63.5 110 39.1
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 1.9e-08 62.8 73 54.8
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 1.9e-08 62.8 43 72.1
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.5e-08 62.4 58 62.1
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 3.3e-08 62.0 48 68.8
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 3.3e-08 62.0 41 73.2
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 4.3e-08 61.6 110 42.7
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 4.3e-08 61.6 41 75.6
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 4.3e-08 61.6 94 43.6
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 4.3e-08 61.6 37 83.8
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 5.6e-08 61.2 87 44.8
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 7.3e-08 60.8 73 52.1
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 9.6e-08 60.5 67 52.2
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 9.6e-08 60.5 52 65.4
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 9.6e-08 60.5 44 75.0
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 1.6e-07 59.7 38 78.9
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.6e-07 59.7 39 74.4
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 2.1e-07 59.3 100 38.0
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 2.1e-07 59.3 74 50.0
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 2.1e-07 59.3 36 77.8
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 2.8e-07 58.9 41 70.7
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 2.8e-07 58.9 41 70.7
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 2.8e-07 58.9 53 60.4
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 2.8e-07 58.9 67 53.7
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 2.8e-07 58.9 103 37.9
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 3.6e-07 58.5 34 85.3
CsaV3_7G032550 Cucumis sativus L. HOM05D007863 ORTHO05D009265 3.6e-07 58.5 38 76.3
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 3.6e-07 58.5 38 73.7
ATR1156G029 Amborella trichopoda HOM05D007863 ORTHO05D009265 4.8e-07 58.2 40 67.5
MELO3C023407.2 Cucumis melo HOM05D007863 ORTHO05D009265 4.8e-07 58.2 38 76.3
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 4.8e-07 58.2 56 58.9
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 4.8e-07 58.2 53 62.3
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 4.8e-07 58.2 50 64.0
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 4.8e-07 58.2 53 60.4
Sed0015441 Sechium edule HOM05D007863 ORTHO05D009265 4.8e-07 58.2 34 82.4
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 8.1e-07 57.4 53 58.5
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 8.1e-07 57.4 95 43.2
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 1.4e-06 56.6 54 59.3
Lsat_1_v5_gn_5_132141 Lactuca sativa HOM05D007863 ORTHO05D009265 1.8e-06 56.2 63 52.4
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 2.4e-06 55.8 70 51.4
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 2.4e-06 55.8 84 46.4
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 2.4e-06 55.8 65 47.7


User provided reference genes

Program Settings