Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 5.5e-50 200.7 101 100.0
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.1e-18 96.7 70 65.7
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 3.2e-18 95.1 66 69.7
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 5.5e-18 94.4 93 54.8
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.6e-17 92.8 98 52.0
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.7e-17 92.0 64 67.2
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 4.7e-17 91.3 76 60.5
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.4e-16 89.7 66 65.2
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.4e-16 89.7 66 65.2
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.4e-16 89.7 66 65.2
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.4e-16 89.7 70 61.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.8e-16 89.4 66 63.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 2.3e-16 89.0 71 62.0
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.3e-16 89.0 70 61.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 3.0e-16 88.6 70 60.0
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-16 88.6 66 65.2
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 3.9e-16 88.2 70 60.0
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 6.7e-16 87.4 70 65.7
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 8.8e-16 87.0 86 57.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.1e-15 86.7 66 63.6
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.1e-15 86.7 83 57.8
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 2.0e-15 85.9 65 63.1
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 2.6e-15 85.5 93 53.8
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 2.6e-15 85.5 81 53.1
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.6e-15 85.5 71 60.6
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.4e-15 84.7 66 63.6
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 7.4e-15 84.0 59 69.5
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 7.4e-15 84.0 59 69.5
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 7.4e-15 84.0 60 65.0
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 7.4e-15 84.0 70 62.9
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 9.7e-15 83.6 68 58.8
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.7e-14 82.8 52 75.0
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.7e-14 82.8 52 71.2
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 3.7e-14 81.6 60 63.3
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.3e-14 80.9 61 62.3
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 6.3e-14 80.9 53 67.9
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 8.2e-14 80.5 56 60.7
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.2e-14 80.5 72 58.3
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.1e-13 80.1 72 58.3
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.1e-13 80.1 85 54.1
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.8e-13 79.3 73 57.5
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.8e-13 79.3 59 67.8
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 2.4e-13 79.0 57 59.6
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 3.1e-13 78.6 66 59.1
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 4.1e-13 78.2 69 58.0
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.3e-13 77.8 55 65.5
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 7.0e-13 77.4 100 47.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 7.0e-13 77.4 52 73.1
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 7.0e-13 77.4 52 73.1
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 9.1e-13 77.0 97 47.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 9.1e-13 77.0 67 55.2
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 9.1e-13 77.0 71 56.3
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.2e-12 76.6 56 64.3
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.2e-12 76.6 69 56.5
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.2e-12 76.6 69 56.5
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.6e-12 76.3 50 70.0
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 2.0e-12 75.9 87 48.3
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 2.6e-12 75.5 88 48.9
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 3.5e-12 75.1 62 56.5
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 3.5e-12 75.1 51 72.5
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.5e-12 74.7 55 61.8
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 4.5e-12 74.7 95 42.1
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 5.9e-12 74.3 97 45.4
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 5.9e-12 74.3 87 50.6
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 5.9e-12 74.3 82 46.3
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 7.7e-12 73.9 97 48.5
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 7.7e-12 73.9 70 60.0
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.0e-11 73.6 47 70.2
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.0e-11 73.6 50 66.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.3e-11 73.2 95 46.3
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.3e-11 73.2 72 56.9
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 1.7e-11 72.8 85 48.2
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 1.7e-11 72.8 71 53.5
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.7e-11 72.8 92 50.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 1.7e-11 72.8 50 66.0
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.2e-11 72.4 68 60.3
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 2.2e-11 72.4 58 65.5
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.9e-11 72.0 84 48.8
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.8e-11 71.6 58 60.3
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.8e-11 71.6 57 57.9
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 3.8e-11 71.6 88 44.3
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 6.5e-11 70.9 70 52.9
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.5e-11 70.9 72 51.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 8.5e-11 70.5 52 63.5
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 8.5e-11 70.5 52 63.5
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 8.5e-11 70.5 52 63.5
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 8.5e-11 70.5 55 56.4
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 8.5e-11 70.5 76 50.0
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.1e-10 70.1 94 41.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 1.1e-10 70.1 88 50.0
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.5e-10 69.7 58 58.6
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.5e-10 69.7 60 63.3
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.9e-10 69.3 41 75.6
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.5e-10 68.9 38 78.9
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 7.2e-10 67.4 46 65.2
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 7.2e-10 67.4 63 52.4
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 2.7e-09 65.5 51 64.7
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 2.7e-09 65.5 49 65.3
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 6.1e-09 64.3 101 41.6
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 6.1e-09 64.3 60 56.7
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 8.0e-09 63.9 58 55.2
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.0e-09 63.9 83 43.4
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 8.0e-09 63.9 60 51.7
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 8.0e-09 63.9 57 57.9
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.0e-08 62.0 83 43.4
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 7.5e-07 57.4 48 60.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 7.5e-07 57.4 62 48.4
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.7e-06 56.2 84 42.9
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.2e-06 55.8 75 44.0
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 2.8e-06 55.5 55 52.7
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 8.2e-06 53.9 77 39.0
Peaxi162Scf00271g00524 Petunia axillaris HOM05D006882 ORTHO05D008688 8.2e-06 53.9 34 73.5


User provided reference genes

Program Settings