Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 3.2e-119 431.8 221 100.0
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.0e-98 361.7 215 81.9
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 9.0e-98 360.5 215 82.8
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.2e-97 360.1 215 82.3
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 3.4e-97 358.6 215 84.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-95 353.6 216 80.1
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 3.2e-95 352.1 216 81.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.2e-95 351.7 216 79.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.1e-95 350.9 217 79.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 7.1e-95 350.9 215 80.9
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.1e-94 349.4 215 78.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.1e-94 349.4 217 78.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.7e-94 349.0 217 78.8
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.7e-94 349.0 214 79.0
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.5e-94 348.6 215 80.9
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 7.9e-94 347.4 216 79.2
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.0e-93 347.1 216 78.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.0e-93 347.1 216 78.7
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.8e-93 346.3 215 79.1
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.0e-93 345.5 215 77.2
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.0e-93 345.5 217 79.7
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.9e-93 345.1 215 78.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 3.9e-93 345.1 214 78.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 6.7e-93 344.4 214 78.5
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 8.7e-93 344.0 215 78.1
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.1e-92 343.6 215 78.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.3e-92 341.7 215 78.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 4.3e-92 341.7 216 77.8
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 5.7e-92 341.3 216 75.9
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.7e-92 341.3 215 77.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-91 339.7 217 76.0
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.1e-91 339.3 215 78.1
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.1e-91 339.3 217 76.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.1e-91 339.3 215 76.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.8e-91 339.0 215 77.7
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 6.3e-91 337.8 217 75.6
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.1e-90 337.0 215 77.7
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.1e-90 337.0 217 76.5
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.1e-90 337.0 215 77.7
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.4e-90 336.7 215 77.2
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-90 335.9 217 75.1
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 6.9e-90 334.3 228 74.6
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 9.0e-90 334.0 215 75.3
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 9.0e-90 334.0 216 75.5
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 9.0e-90 334.0 219 74.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-89 333.6 216 76.9
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-89 333.6 216 76.9
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.5e-89 333.2 215 76.7
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.6e-89 332.4 204 81.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.4e-89 332.0 213 77.0
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 3.4e-89 332.0 215 75.3
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 4.5e-89 331.6 215 74.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 7.6e-89 330.9 217 72.4
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.7e-88 329.7 217 71.9
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.2e-88 329.3 215 75.3
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.2e-88 329.3 217 74.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.9e-88 328.9 219 75.8
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.9e-88 328.9 216 75.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 3.8e-88 328.6 225 72.4
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 8.4e-88 327.4 213 75.6
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.1e-87 327.0 217 73.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.4e-87 326.6 217 75.1
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.9e-87 326.2 217 74.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.5e-87 325.9 216 73.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.2e-87 325.5 217 73.7
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-87 324.7 215 73.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-87 324.7 216 72.2
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-87 324.7 215 73.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 5.5e-87 324.7 215 72.1
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 7.2e-87 324.3 218 74.8
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 9.3e-87 323.9 215 73.5
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 9.3e-87 323.9 215 73.0
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-86 323.6 215 72.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.2e-86 323.6 215 73.0
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.6e-86 323.2 215 74.0
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.1e-86 322.8 215 72.6
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.7e-86 322.4 215 71.6
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.7e-86 322.4 215 73.0
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 2.7e-86 322.4 215 72.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.7e-86 322.4 217 73.3
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 3.6e-86 322.0 215 72.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.6e-86 321.6 215 72.1
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 4.6e-86 321.6 215 72.6
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.6e-86 321.6 215 72.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 6.1e-86 321.2 214 72.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 6.1e-86 321.2 219 72.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.1e-86 321.2 215 73.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 7.9e-86 320.9 217 71.9
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 7.9e-86 320.9 215 71.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-85 320.5 217 71.9
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.8e-85 319.7 215 71.2
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.3e-85 319.3 201 78.1
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.3e-85 319.3 215 73.0
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.0e-85 318.9 215 73.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.0e-85 318.9 215 74.0
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 3.9e-85 318.5 215 72.6
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 3.9e-85 318.5 217 71.4
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 8.7e-85 317.4 204 75.0
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.7e-85 317.4 199 77.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.1e-84 317.0 215 73.0
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.5e-84 316.6 203 75.9
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.7e-84 314.7 215 73.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.8e-82 309.7 186 81.2
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.1e-82 308.9 206 71.8
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.1e-82 308.5 206 71.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 9.0e-82 307.4 203 73.4
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.2e-81 307.0 225 68.4
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-81 305.8 217 69.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.7e-81 304.3 217 69.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-80 303.5 202 73.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.2e-80 302.8 208 70.2
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.9e-80 302.4 203 72.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-79 300.1 209 69.9
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.4e-79 300.1 209 69.9
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.4e-79 300.1 204 71.6
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.5e-79 299.3 199 72.4
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 3.2e-79 298.9 215 70.2
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 4.2e-79 298.5 215 69.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.6e-78 295.4 204 70.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.1e-78 294.7 253 60.9
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.9e-78 294.3 214 67.3
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.0e-77 293.9 219 68.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.4e-77 293.5 193 76.7
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.0e-76 289.7 214 68.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.3e-76 288.9 216 70.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 7.4e-76 287.7 202 68.3
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.3e-75 287.0 199 68.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.3e-75 287.0 237 62.4
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 8.2e-75 284.3 213 67.6
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 2.4e-74 282.7 198 68.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.2e-73 280.4 214 63.6
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.4e-73 278.9 160 87.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.4e-71 273.5 213 61.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.3e-68 262.3 177 73.4
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.4e-68 261.9 214 64.0
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 9.7e-68 260.8 217 63.1
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.7e-67 258.8 231 60.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.1e-66 255.8 216 61.6
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.6e-65 252.7 196 67.3
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.8e-64 248.8 216 63.4
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.7e-62 241.9 221 57.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.0e-61 239.2 212 61.3
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-60 235.3 159 73.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 9.7e-60 234.2 213 56.8
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.2e-59 233.0 219 57.1
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.4e-58 230.3 213 55.4
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.1e-58 228.8 186 64.5
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.3e-58 228.4 216 56.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.1e-58 227.6 204 59.3
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 9.1e-58 227.6 150 76.0
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.2e-57 227.3 209 57.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-57 226.5 159 69.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.0e-53 212.6 183 63.4
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.2e-52 210.7 211 51.2
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-52 209.5 161 64.6
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 7.7e-41 171.4 156 56.4
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.9e-39 166.8 189 53.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 8.0e-38 161.4 240 40.4
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-36 156.0 106 75.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 8.3e-35 151.4 224 42.9
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.6e-33 147.1 104 68.3
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-32 143.3 94 72.3
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-32 143.3 113 62.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.9e-31 140.2 217 41.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-29 134.0 114 60.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-27 125.6 108 65.7
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.7e-25 119.8 156 42.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 4.6e-25 119.0 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.8e-17 91.7 66 63.6
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.1e-15 87.8 70 64.3
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.1e-13 81.3 201 27.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.3e-13 80.1 71 53.5
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.7e-11 73.9 105 42.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 6.6e-08 62.0 40 65.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 4.3e-07 59.3 69 50.7


User provided reference genes

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