Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 6.1e-193 677.6 407 100.0
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.1e-64 251.5 419 47.0
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.2e-59 232.6 416 44.2
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 5.2e-59 232.6 416 44.2
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 9.8e-58 228.4 422 44.5
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 4.9e-57 226.1 422 44.3
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 2.4e-56 223.8 424 44.3
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.2e-55 221.5 414 45.2
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 1.3e-54 218.0 432 43.5
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 3.0e-54 216.9 423 43.5
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 6.6e-54 215.7 424 43.4
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 4.3e-53 213.0 418 43.3
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 4.7e-52 209.5 413 43.6
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 1.1e-51 208.4 419 42.2
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 5.2e-51 206.1 161 70.2
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 2.0e-50 204.1 440 40.0
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 2.0e-50 204.1 438 40.0
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 7.5e-50 202.2 444 41.9
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 2.2e-49 200.7 419 42.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 2.9e-49 200.3 436 39.7
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.9e-49 200.3 436 39.7
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 3.7e-49 199.9 408 44.1
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 3.7e-49 199.9 415 40.7
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.4e-49 199.1 415 40.7
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.1e-48 198.4 441 41.3
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 9.2e-48 195.3 445 40.4
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.2e-47 194.9 436 39.2
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.2e-47 194.9 425 40.2
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 4.6e-47 193.0 395 42.3
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 4.6e-47 193.0 436 39.0
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 7.8e-47 192.2 408 42.2
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.7e-46 191.0 441 39.5
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.3e-46 190.7 394 41.9
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 5.1e-46 189.5 446 39.2
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 6.6e-46 189.1 439 41.0
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 1.5e-45 188.0 420 41.7
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 4.3e-45 186.4 446 39.5
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 5.6e-45 186.0 432 40.7
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.6e-44 184.5 443 39.3
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 2.1e-44 184.1 426 40.1
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 3.6e-44 183.3 427 41.5
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 4.7e-44 183.0 416 38.5
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 8.1e-44 182.2 409 42.8
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 2.0e-42 177.6 417 39.3
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 3.4e-42 176.8 423 39.2
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 3.8e-41 173.3 426 38.5
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 4.9e-41 172.9 431 39.4
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.2e-39 168.3 430 36.7
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 4.6e-39 166.4 420 38.3
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 9.6e-37 158.7 434 35.5
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 3.6e-36 156.8 431 36.0
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.1e-35 155.2 413 37.5
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.4e-35 154.8 488 35.7
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.4e-35 154.1 443 35.0
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 4.0e-35 153.3 439 36.7
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 2.0e-34 151.0 396 37.9
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 2.0e-34 151.0 416 36.3
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 2.6e-34 150.6 420 35.7
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 4.4e-34 149.8 433 34.6
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 5.4e-32 142.9 372 36.0
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 9.3e-32 142.1 382 35.9
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.2e-31 141.7 437 36.6
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 1.6e-31 141.4 413 34.4
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 6.0e-31 139.4 421 34.2
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 6.0e-31 139.4 184 49.5
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 5.1e-30 136.3 434 34.6
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 6.6e-30 136.0 436 34.6
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 1.1e-29 135.2 442 33.5
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 1.5e-29 134.8 411 33.8
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 2.5e-29 134.0 422 35.3
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 7.3e-29 132.5 424 35.8
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 2.8e-28 130.6 422 35.5
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 5.3e-27 126.3 410 35.1
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 1.5e-26 124.8 423 33.8
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 5.8e-26 122.9 415 31.8
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 2.9e-25 120.6 378 33.6
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 1.4e-24 118.2 407 32.9
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.9e-24 117.9 92 68.5
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 9.3e-24 115.5 371 34.5
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 2.1e-23 114.4 364 33.0
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 5.1e-22 109.8 324 36.7
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.7e-22 109.0 327 33.3
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 2.5e-21 107.5 88 65.9
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.5e-21 107.5 327 33.3
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 7.4e-21 105.9 417 32.4
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 1.4e-19 101.7 425 31.5
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 1.2e-18 98.6 88 56.8
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 7.6e-18 95.9 436 31.2
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 1.0e-17 95.5 315 34.6
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 1.0e-17 95.5 315 34.6
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 9.6e-13 79.0 140 35.0
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.6e-12 78.2 141 34.0
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.1e-12 77.8 408 25.7
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 3.7e-12 77.0 315 34.0
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.8e-11 74.7 408 25.7
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 5.3e-11 73.2 433 25.9
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 9.0e-11 72.4 151 29.8
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.2e-10 72.0 221 25.8
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 1.2e-10 72.0 180 31.7
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.5e-10 71.6 413 28.3
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 2.0e-10 71.2 214 27.6
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.0e-10 71.2 400 28.5
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 3.4e-10 70.5 141 34.0
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 5.8e-10 69.7 46 73.9
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.0e-09 68.9 125 35.2
AagrBONN_evm.TU.Sc2ySwM_117.3581 Anthoceros agrestis HOM05D024742 ORTHO05D008955 1.0e-09 68.9 132 32.6
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.0e-09 68.9 410 25.4
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 1.0e-09 68.9 433 27.0
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 1.3e-09 68.6 320 30.9
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 1.7e-09 68.2 430 27.0
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.9e-09 67.4 399 26.8
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 2.9e-09 67.4 408 25.5
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 2.9e-09 67.4 423 23.2
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 3.8e-09 67.0 412 23.5
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 5.0e-09 66.6 410 27.1
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 6.5e-09 66.2 214 28.0
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 6.5e-09 66.2 169 30.2
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 8.4e-09 65.9 415 26.7
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.1e-08 65.5 406 23.9
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 2.5e-08 64.3 414 26.1
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 3.2e-08 63.9 412 26.0
Mapoly0040s0042 Marchantia polymorpha HOM05D024742 ORTHO05D030099 4.2e-08 63.5 185 31.4
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 4.2e-08 63.5 130 33.1
SEGI_14285 Sequoiadendron giganteum HOM05D007286 ORTHO05D008955 4.2e-08 63.5 130 33.1
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 7.1e-08 62.8 153 28.1
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 9.3e-08 62.4 406 25.6
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 2.1e-07 61.2 197 28.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.5e-07 60.5 48 62.5
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 4.6e-07 60.1 404 24.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 4.6e-07 60.1 425 24.5
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 6.1e-07 59.7 410 29.8
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 7.9e-07 59.3 421 24.5
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 7.9e-07 59.3 413 25.2
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.3e-06 58.5 154 29.9
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 1.3e-06 58.5 416 27.2
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.8e-06 58.2 188 28.2
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.3e-06 57.8 404 26.2
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 2.3e-06 57.8 184 29.3
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.0e-06 57.4 414 24.2
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 3.0e-06 57.4 408 25.2
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.9e-06 57.0 422 24.4
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 6.7e-06 56.2 393 24.4
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 6.7e-06 56.2 161 27.3
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 8.7e-06 55.8 141 29.1
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 8.7e-06 55.8 396 26.8


User provided reference genes

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