Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 1.8e-238 829.7 745 100.0
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 9.5e-67 259.2 437 40.7
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 1.4e-65 255.4 448 45.8
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 4.9e-63 246.9 399 46.1
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 8.6e-60 236.1 445 45.2
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 5.6e-59 233.4 333 39.9
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.2e-58 232.3 335 40.3
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 8.1e-58 229.6 408 44.9
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 8.1e-58 229.6 408 44.9
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 1.1e-57 229.2 377 44.3
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 3.1e-57 227.6 334 39.8
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 4.0e-57 227.3 362 41.7
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 6.8e-57 226.5 362 40.3
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 2.2e-55 221.5 382 42.7
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 6.4e-55 219.9 401 43.1
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 1.1e-54 219.2 347 39.5
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 1.1e-54 219.2 454 42.1
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 1.6e-53 215.3 447 41.8
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 3.5e-53 214.2 373 38.1
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 3.5e-53 214.2 344 38.4
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 5.1e-52 210.3 374 40.1
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 6.6e-52 209.9 421 41.1
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 8.7e-52 209.5 376 37.2
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 2.5e-51 208.0 450 40.9
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 3.3e-51 207.6 380 37.4
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 4.3e-51 207.2 421 40.9
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 5.6e-51 206.8 331 40.2
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 7.3e-51 206.5 374 36.6
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 7.3e-51 206.5 346 40.2
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.2e-50 205.7 421 41.1
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 1.2e-50 205.7 438 40.0
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.6e-50 205.3 422 40.0
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 2.1e-50 204.9 386 38.6
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 4.7e-50 203.8 380 36.6
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 6.2e-50 203.4 374 38.2
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.1e-50 203.0 436 43.1
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 8.1e-50 203.0 437 39.8
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 1.1e-49 202.6 354 37.3
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 9.0e-49 199.5 435 42.1
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.5e-48 198.7 358 39.1
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.6e-48 198.0 373 37.5
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.3e-47 195.7 354 39.3
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 2.2e-47 194.9 356 37.1
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-46 192.6 365 37.8
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 1.1e-46 192.6 375 35.7
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.4e-46 192.2 363 40.2
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 4.2e-46 190.7 327 38.8
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.1e-46 189.9 295 40.0
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 9.3e-46 189.5 370 43.5
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 2.1e-45 188.3 337 39.5
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.5e-45 187.6 365 36.2
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 4.6e-45 187.2 415 32.8
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 4.6e-45 187.2 341 37.2
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.9e-44 184.1 364 36.5
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 3.9e-44 184.1 377 36.3
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.5e-43 182.2 407 32.7
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.9e-43 181.8 376 35.4
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 7.3e-43 179.9 365 32.9
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.1e-42 178.3 369 34.1
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 6.2e-42 176.8 271 36.5
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.2e-42 176.8 415 31.8
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 2.4e-41 174.9 373 35.7
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 4.0e-41 174.1 200 42.5
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 2.0e-40 171.8 400 44.2
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.4e-40 171.0 445 37.5
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 3.4e-40 171.0 396 36.4
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 4.5e-40 170.6 289 35.6
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.3e-39 169.1 297 32.7
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 1.7e-39 168.7 199 46.7
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.7e-39 168.7 368 38.3
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 4.9e-39 167.2 411 32.1
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.9e-39 167.2 442 30.5
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 4.9e-39 167.2 223 40.4
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 6.4e-39 166.8 337 37.4
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 8.4e-39 166.4 434 39.4
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 8.4e-39 166.4 398 35.7
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.4e-38 164.9 255 36.1
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 2.4e-38 164.9 360 35.3
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 5.4e-38 163.7 316 33.5
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 7.1e-38 163.3 434 39.2
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 9.3e-38 162.9 424 36.6
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 9.3e-38 162.9 424 33.0
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.6e-37 162.2 410 32.2
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.1e-37 161.8 358 35.2
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 2.7e-37 161.4 425 35.8
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 2.7e-37 161.4 400 37.0
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 3.5e-37 161.0 400 37.0
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 6.0e-37 160.2 363 31.1
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 6.0e-37 160.2 398 36.4
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 6.0e-37 160.2 450 33.3
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.0e-36 159.5 426 29.8
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.3e-36 158.3 398 36.2
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.3e-36 158.3 398 36.2
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 2.3e-36 158.3 209 39.2
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 3.0e-36 157.9 325 33.8
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 3.9e-36 157.5 349 35.2
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 5.1e-36 157.1 432 39.4
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.1e-35 156.0 595 66.6
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 1.9e-35 155.2 209 37.3
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 7.4e-35 153.3 209 37.8
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 9.6e-35 152.9 318 35.8
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 2.4e-33 148.3 307 42.0
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 4.0e-33 147.5 356 32.9
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.5e-32 145.6 364 32.7
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 1.3e-31 142.5 347 32.0
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 1.7e-31 142.1 215 36.7
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-31 142.1 415 29.6
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 1.7e-31 142.1 281 45.9
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 4.2e-30 137.5 585 65.5
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 5.5e-30 137.1 284 41.2
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 1.2e-29 136.0 156 46.2
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 3.3e-27 127.9 210 34.8
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 1.6e-26 125.6 395 30.9
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.8e-26 124.8 515 27.4
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 5.3e-25 120.6 237 35.4
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.5e-24 119.0 321 29.9
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.1e-22 112.8 302 31.1
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.4e-19 100.1 157 35.0
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 1.6e-18 99.0 584 62.8
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 6.3e-18 97.1 227 29.1
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 5.3e-17 94.0 85 50.6
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.0e-17 93.2 101 44.6
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 5.9e-16 90.5 206 31.6
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.6e-13 82.4 256 28.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.4e-12 79.3 124 35.5
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 3.0e-12 78.2 159 30.8
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 6.7e-12 77.0 127 33.1
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.3e-10 72.8 232 28.9
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.3e-10 70.5 192 29.7
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 1.1e-09 69.7 112 33.9
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.8e-09 68.9 84 45.2
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 4.1e-09 67.8 170 31.8
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 5.3e-09 67.4 80 38.8
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 1.2e-08 66.2 55 58.2
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 1.2e-08 66.2 365 25.8
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.0e-08 65.5 240 25.8
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.6e-08 65.1 90 33.3
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 2.6e-08 65.1 281 26.7
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 5.9e-08 63.9 54 51.9
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.3e-07 62.8 80 37.5
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 1.7e-07 62.4 116 29.3
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 2.2e-07 62.0 381 25.2
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.2e-07 62.0 84 41.7
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.9e-07 61.6 240 25.0
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 3.8e-07 61.2 356 25.3
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.4e-06 59.3 138 47.1
CiPaw.01G066500 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.4e-06 59.3 104 62.5
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 3.2e-06 58.2 111 31.5
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 7.2e-06 57.0 207 22.7
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 9.4e-06 56.6 111 30.6


User provided reference genes

Program Settings