Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025206 Daucus carota HOM05D009487 ORTHO05D011434 1.9e-217 758.8 361 100.0
DCAR_025205 Daucus carota HOM05D000041 ORTHO05D008933 4.2e-129 465.3 359 65.7
DCAR_005359 Daucus carota HOM05D009487 ORTHO05D011434 8.6e-90 334.7 363 48.5
DCAR_025207 Daucus carota HOM05D009487 ORTHO05D011434 3.0e-82 309.7 358 43.9
Hma1.2p1_0071F.1_g037920 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 1.2e-78 297.7 354 44.9
Rhsim13G0006900 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.9e-77 292.4 368 44.8
Hma1.2p1_0071F.1_g037940 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 2.1e-75 287.0 357 42.3
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.4e-55 220.3 329 40.4
Nn1g09219 Nelumbo nucifera HOM05D009487 ORTHO05D011434 2.9e-53 213.4 367 36.0
TAR371G0718 Trochodendron aralioides HOM05D009487 ORTHO05D011434 7.9e-43 178.7 366 34.4
Aqoxy2G00485 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.3e-37 161.4 370 31.4
Aqoxy2G04013 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.2e-35 154.8 368 31.0
CSS0036745 Camellia sinensis var. sinensis HOM05D009487 ORTHO05D011434 1.4e-34 151.4 386 29.0
Aqoxy2G04015 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.1e-33 148.3 368 30.4
Lj9C465T16 Lonicera japonica HOM05D009487 ORTHO05D011434 2.9e-29 133.7 303 29.0
Nn2g13898 Nelumbo nucifera HOM05D009487 ORTHO05D011434 5.0e-29 132.9 384 29.4
DCAR_025209 Daucus carota HOM05D009487 ORTHO05D011434 1.9e-28 131.0 107 53.3
Rhsim05G0023100 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.2e-28 129.8 369 27.1
RhsimUnG0144600 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.4e-28 128.6 316 28.8
RhsimUnG0032500 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.7e-27 126.3 313 29.1
RhsimUnG0032700 Rhododendron simsii HOM05D009487 ORTHO05D011434 8.0e-27 125.6 313 29.4
RhsimUnG0188900 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.8e-26 124.4 313 28.8
RhsimUnG0032600 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.0e-26 123.2 313 28.8
RhsimUnG0144900 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.0e-26 123.2 316 29.1
Aqoxy4G00872 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 3.7e-24 116.7 366 28.1
RhsimUnG0144700 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.7e-24 116.7 316 28.5
Rhsim05G0023000 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.8e-21 106.7 313 27.8
Lj9C465T15 Lonicera japonica HOM05D009487 ORTHO05D011434 1.5e-17 94.7 255 29.0
Rhsim05G0150400 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.5e-17 94.7 262 27.9
Rhsim08G0205000 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.4e-15 88.2 315 25.4
Dinv32989 Davidia involucrata HOM05D007879 ORTHO05D000440 1.8e-15 87.8 223 25.1
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 5.4e-15 86.3 189 29.1
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 1.2e-14 85.1 181 29.8
DCAR_025208 Daucus carota HOM05D009487 ORTHO05D011434 2.0e-14 84.3 122 37.7
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 2.7e-14 84.0 236 26.7
Lj2g0018976 Lotus japonicus HOM05D008995 ORTHO05D000074 2.7e-14 84.0 336 24.4
Rhsim05G0023300 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.7e-14 84.0 125 35.2
TPR.G23322 Trifolium pratense HOM05D001286 ORTHO05D000440 2.7e-14 84.0 186 30.1
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 3.5e-14 83.6 225 25.8
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 4.5e-14 83.2 228 26.3
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 5.9e-14 82.8 225 25.8
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 7.7e-14 82.4 307 25.1
Rhsim08G0204600 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.7e-13 81.3 315 25.7
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.3e-13 80.9 226 26.5
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 2.9e-13 80.5 225 25.3
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 2.9e-13 80.5 182 27.5
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 2.9e-13 80.5 225 25.8
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 2.9e-13 80.5 183 29.0
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.8e-13 80.1 287 23.7
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 3.8e-13 80.1 182 28.6
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 3.8e-13 80.1 286 23.4
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 5.0e-13 79.7 223 25.1
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 5.0e-13 79.7 182 28.6
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 5.0e-13 79.7 225 24.9
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 5.0e-13 79.7 317 24.6
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 8.6e-13 79.0 225 25.8
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 8.6e-13 79.0 188 26.1
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 1.1e-12 78.6 187 27.3
THA.LOC104816392 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 1.1e-12 78.6 230 26.5
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 1.9e-12 77.8 225 24.0
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.9e-12 77.8 297 24.9
FAN15G1295 Fragaria x ananassa HOM05D007879 ORTHO05D000440 1.9e-12 77.8 200 25.0
RhsimUnG0188800 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.9e-12 77.8 235 26.4
Thecc.01G290000 Theobroma cacao HOM05D007879 ORTHO05D000440 1.9e-12 77.8 197 28.9
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.9e-12 77.8 225 24.4
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 2.5e-12 77.4 182 27.5
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 2.5e-12 77.4 186 27.4
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 3.2e-12 77.0 225 26.2
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 3.2e-12 77.0 225 26.2
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 4.2e-12 76.6 233 24.0
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 5.5e-12 76.3 228 25.4
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 5.5e-12 76.3 292 23.6
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 1.2e-11 75.1 286 23.1
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.6e-11 74.7 287 24.0
VMungo0540G1869 Vigna mungo HOM05D007879 ORTHO05D000440 1.6e-11 74.7 215 29.8
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 2.1e-11 74.3 181 30.4
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 2.1e-11 74.3 300 23.3
TAR369G0559 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.1e-11 74.3 240 25.4
TAR369G0746 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.1e-11 74.3 240 25.4
FvH4_2g24700 Fragaria vesca HOM05D007879 ORTHO05D000440 2.8e-11 73.9 200 24.5
FAN24G0183 Fragaria x ananassa HOM05D007879 ORTHO05D000440 2.8e-11 73.9 200 24.5
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 3.6e-11 73.6 286 23.1
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 3.6e-11 73.6 286 23.1
Rhsim13G0015000 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.6e-11 73.6 180 32.2
Sp5g06085 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.6e-11 73.6 137 29.9
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 6.1e-11 72.8 287 23.7
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 6.1e-11 72.8 287 23.7
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 6.1e-11 72.8 262 22.9
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 6.1e-11 72.8 283 23.3
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 6.1e-11 72.8 182 27.5
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 6.1e-11 72.8 286 23.4
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 8.0e-11 72.4 194 26.3
TAR636G3329 Trochodendron aralioides HOM05D001286 ORTHO05D000440 8.0e-11 72.4 130 31.5
Haze_09881 Corylus avellana HOM05D001286 ORTHO05D000440 1.0e-10 72.0 132 34.1
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 1.0e-10 72.0 178 28.7
AT3G56470 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.4e-10 71.6 282 22.7
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 1.4e-10 71.6 134 30.6
TAR374G1264 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.4e-10 71.6 306 22.9
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 1.8e-10 71.2 134 31.3
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 1.8e-10 71.2 182 25.3
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 2.3e-10 70.9 183 26.8
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.3e-10 70.9 225 27.1
FvH4_3g27200 Fragaria vesca HOM05D008995 ORTHO05D000074 2.3e-10 70.9 196 28.1
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 2.3e-10 70.9 179 27.9
Peaxi162Scf00404g00218 Petunia axillaris HOM05D001286 ORTHO05D000440 2.3e-10 70.9 259 21.6
FAN20G2795 Fragaria x ananassa HOM05D007879 ORTHO05D000440 3.0e-10 70.5 139 30.9
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 3.0e-10 70.5 346 21.7
Cfa021905 Carpinus fangiana HOM05D001286 ORTHO05D000440 4.0e-10 70.1 132 33.3
Dinv05292 Davidia involucrata HOM05D003536 ORTHO05D004233 4.0e-10 70.1 130 36.9
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.0e-10 70.1 136 33.1
TAR369G0060 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.0e-10 70.1 243 25.1
FAN14G2386 Fragaria x ananassa HOM05D001286 ORTHO05D000440 5.2e-10 69.7 346 22.5
Lsat_1_v5_gn_8_77420 Lactuca sativa HOM05D001286 ORTHO05D000440 5.2e-10 69.7 143 29.4
Aqoxy5G03594 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.8e-10 69.3 221 26.2
FvH4_6g18890 Fragaria vesca HOM05D001286 ORTHO05D000440 6.8e-10 69.3 346 22.5
FAN27G2132 Fragaria x ananassa HOM05D007879 ORTHO05D000440 6.8e-10 69.3 142 31.0
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 6.8e-10 69.3 259 21.2
Atru.chr5.110 Acer truncatum HOM05D001286 ORTHO05D000440 8.8e-10 68.9 312 20.8
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 1.2e-09 68.6 134 30.6
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 1.2e-09 68.6 194 26.3
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 1.2e-09 68.6 179 25.7
AL5G37800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.5e-09 68.2 279 22.2
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 1.5e-09 68.2 189 26.5
FAN11G1982 Fragaria x ananassa HOM05D008995 ORTHO05D000074 1.5e-09 68.2 196 28.1
FAN25G1763 Fragaria x ananassa HOM05D008995 ORTHO05D000074 1.5e-09 68.2 191 27.7
TWI12G1091 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.5e-09 68.2 236 28.0
Lalb_Chr17g0338871 Lupinus albus HOM05D008995 ORTHO05D000074 2.6e-09 67.4 185 30.8
A09p49390 Brassica napus HOM05D001050 ORTHO05D001270 3.4e-09 67.0 215 22.8
BraA09t40392Z Brassica rapa HOM05D001050 ORTHO05D001270 3.4e-09 67.0 215 22.8
FAN16G1355 Fragaria x ananassa HOM05D008995 ORTHO05D000074 3.4e-09 67.0 196 27.6
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 3.4e-09 67.0 189 25.4
RcHm_v2.0_Chr4g0434481 Rosa chinensis HOM05D008995 ORTHO05D000074 3.4e-09 67.0 196 28.6
C04p05620 Brassica napus HOM05D001286 ORTHO05D000440 5.7e-09 66.2 211 23.2
BolC4t22191H Brassica oleracea HOM05D001286 ORTHO05D000440 5.7e-09 66.2 211 23.2
Sed0022040 Sechium edule HOM05D008995 ORTHO05D000074 5.7e-09 66.2 310 22.9
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 9.8e-09 65.5 183 25.7
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.3e-08 65.1 130 33.1
MBI19_g10180_MAGBIO Magnolia biondii HOM05D001286 ORTHO05D000440 1.3e-08 65.1 188 26.1
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.3e-08 65.1 180 27.8
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 2.8e-08 63.9 131 29.0
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 4.9e-08 63.2 179 24.6
Thhalv10015924m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 4.9e-08 63.2 249 25.7
TAR374G0203 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.9e-08 63.2 351 21.1
Atru.chr2.489 Acer truncatum HOM05D001286 ORTHO05D006029 6.3e-08 62.8 195 24.1
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 6.3e-08 62.8 186 26.9
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.3e-08 62.8 341 21.1
SalBow5G2315 Salvia bowleyana HOM05D001286 ORTHO05D000440 6.3e-08 62.8 226 23.0
Prupe.8G252000 Prunus persica HOM05D007879 ORTHO05D000440 8.3e-08 62.4 131 32.1
AL6G43900 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.4e-07 61.6 247 21.5
BcaC04g21189 Brassica carinata HOM05D001286 ORTHO05D000440 1.4e-07 61.6 144 31.2
C09p34450 Brassica napus HOM05D001286 ORTHO05D000440 1.4e-07 61.6 144 31.2
BolC9t56288H Brassica oleracea HOM05D001286 ORTHO05D000440 1.4e-07 61.6 144 31.2
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.4e-07 61.6 189 26.5
unitig_744.g24700 Utricularia gibba HOM05D001286 ORTHO05D000440 1.4e-07 61.6 145 26.2
Rhsim01G0011500 Rhododendron simsii HOM05D001286 ORTHO05D000440 2.4e-07 60.8 304 24.0
Sp6g12720 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.1e-07 60.5 113 33.6
Thecc.06G008300 Theobroma cacao HOM05D000151 ORTHO05D000074 4.1e-07 60.1 141 30.5
Rhsim01G0011600 Rhododendron simsii HOM05D001286 ORTHO05D000440 5.4e-07 59.7 304 24.0
Thhalv10002259m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.0e-07 59.3 273 22.3
BcaC05g24302 Brassica carinata HOM05D001286 ORTHO05D000440 9.2e-07 58.9 272 23.9
Eucgr.B03923 Eucalyptus grandis HOM05D000151 ORTHO05D000074 9.2e-07 58.9 134 32.1
Sopen12g006910 Solanum pennellii HOM05D000151 ORTHO05D000074 1.2e-06 58.5 229 22.3
MD13G1035900 Malus domestica HOM05D008995 ORTHO05D000074 1.6e-06 58.2 196 25.5
Solyc04g017610.2 Solanum lycopersicum HOM05D000151 ORTHO05D000074 1.6e-06 58.2 231 23.4
arahy.Tifrunner.gnm1.ann1.AR7BJJ Arachis hypogaea HOM05D007879 ORTHO05D000440 2.0e-06 57.8 226 23.5
TAR629G2629 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.0e-06 57.8 132 31.1
AT4G10660 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 2.7e-06 57.4 112 33.0
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 3.5e-06 57.0 173 25.4
Aqoxy7G03795 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.5e-06 56.6 157 29.9
A09p10830 Brassica napus HOM05D001286 ORTHO05D000440 5.9e-06 56.2 173 24.9
A09p10860 Brassica napus HOM05D001286 ORTHO05D000440 5.9e-06 56.2 173 24.9
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.9e-06 56.2 219 25.6
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 7.8e-06 55.8 136 27.9
Lj4g0024835 Lotus japonicus HOM05D007879 ORTHO05D000440 7.8e-06 55.8 108 32.4


User provided reference genes

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