Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.9e-153 545.8 276 100.0
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.0e-90 335.9 179 95.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.0e-86 323.2 275 60.7
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 6.4e-85 318.2 234 67.5
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.4e-84 317.0 275 60.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 9.2e-84 314.3 237 66.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.6e-83 313.5 289 59.9
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.1e-83 313.2 237 67.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 4.6e-83 312.0 238 65.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 7.8e-83 311.2 237 65.0
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.7e-82 310.1 234 67.1
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.1e-81 307.4 249 63.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.5e-81 306.2 229 65.9
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 3.3e-81 305.8 272 60.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.3e-81 304.7 284 56.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.2e-80 303.9 237 65.0
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.1e-80 303.1 222 68.9
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 6.2e-80 301.6 284 56.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 6.2e-80 301.6 284 56.3
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 6.2e-80 301.6 206 71.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 8.1e-80 301.2 252 63.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.1e-79 300.8 223 68.2
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 4.0e-79 298.9 233 66.1
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.2e-79 298.5 238 63.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.2e-78 297.4 187 75.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.5e-78 297.0 222 69.8
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.0e-78 296.6 210 71.0
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.4e-78 295.8 243 64.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.4e-78 295.4 238 64.3
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 5.8e-78 295.0 235 62.6
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.7e-77 293.5 250 60.4
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.9e-77 292.7 211 69.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.9e-77 292.7 205 71.7
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.4e-77 291.6 233 61.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.4e-77 291.2 182 75.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 8.4e-77 291.2 222 65.8
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 8.4e-77 291.2 233 61.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.4e-76 290.4 234 62.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-76 290.4 205 70.2
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 5.4e-76 288.5 222 65.3
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 7.1e-76 288.1 206 70.9
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 7.1e-76 288.1 234 62.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.5e-75 285.8 251 59.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 7.8e-75 284.6 188 73.4
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.0e-74 284.3 188 73.4
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.0e-74 284.3 192 72.4
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.3e-74 283.9 229 64.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.3e-74 283.9 222 64.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.3e-74 283.9 238 59.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.3e-74 283.9 285 55.1
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 5.1e-74 282.0 217 63.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 5.1e-74 282.0 212 65.6
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 8.7e-74 281.2 187 71.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.5e-73 280.4 263 55.5
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-73 280.4 185 73.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.5e-73 280.4 185 73.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.5e-73 280.4 185 73.0
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.5e-73 279.6 221 62.9
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.5e-73 279.6 221 62.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.5e-73 279.6 242 59.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.5e-73 279.6 234 59.8
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 3.3e-73 279.3 247 57.5
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 7.3e-73 278.1 252 59.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 7.3e-73 278.1 222 62.6
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.6e-72 276.9 208 67.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.1e-72 276.6 271 56.8
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 4.8e-72 275.4 188 71.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 6.2e-72 275.0 189 71.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 8.1e-72 274.6 185 71.4
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.1e-71 274.2 188 70.2
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.4e-71 273.9 193 68.9
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 1.8e-71 273.5 243 57.6
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.8e-71 273.5 186 69.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.8e-71 273.5 240 60.8
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.1e-71 272.7 189 70.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 4.0e-71 272.3 187 69.5
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 6.9e-71 271.6 210 65.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 9.0e-71 271.2 199 67.8
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.2e-70 270.8 201 66.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.5e-70 270.4 212 62.7
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.0e-70 270.0 223 60.5
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 4.5e-70 268.9 187 69.0
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 4.5e-70 268.9 196 66.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.8e-70 268.5 278 54.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 9.9e-70 267.7 279 52.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 9.9e-70 267.7 222 61.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 9.9e-70 267.7 207 66.2
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.7e-69 266.9 187 67.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.7e-69 266.9 189 69.8
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.1e-68 264.2 194 67.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.4e-68 263.1 270 52.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 7.1e-68 261.5 270 52.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.3e-68 261.2 239 56.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.3e-68 261.2 239 56.5
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.6e-67 260.4 243 57.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.1e-67 260.0 220 61.8
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 4.6e-67 258.8 192 67.2
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 7.9e-67 258.1 188 69.7
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.0e-66 257.7 194 69.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-66 256.9 183 68.3
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 3.0e-66 256.1 221 58.8
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.9e-66 255.8 214 60.7
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 6.7e-66 255.0 168 71.4
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 8.7e-66 254.6 184 67.9
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.5e-65 253.1 184 67.9
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.3e-65 252.7 188 67.6
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.3e-65 252.3 200 63.0
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 7.4e-65 251.5 166 73.5
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 8.1e-64 248.1 186 64.5
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.6e-62 243.0 253 52.2
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.2e-60 236.1 161 67.1
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 3.0e-58 229.6 221 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.3e-57 226.1 199 57.8
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 6.2e-56 221.9 225 51.6
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.0e-55 219.2 201 58.7
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.0e-53 214.5 132 75.8
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.1e-52 211.1 197 58.4
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.5e-52 209.9 167 59.9
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.2e-51 207.6 148 68.9
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.2e-51 207.6 141 73.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 5.1e-50 202.2 154 65.6
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.3e-45 187.6 154 62.3
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.7e-45 187.2 107 80.4
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 7.2e-44 181.8 108 75.9
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 7.2e-36 155.2 91 78.0
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-33 146.4 241 39.0
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.1e-31 138.3 233 40.8
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 7.7e-30 135.2 91 67.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.7e-27 126.7 111 64.0
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.7e-27 126.7 111 64.0
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 3.6e-27 126.3 137 47.4
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 4.7e-27 125.9 149 40.3
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 6.7e-26 122.1 99 65.7
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.5e-25 120.9 133 43.6
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.2e-24 117.1 128 49.2
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.3e-23 112.5 124 54.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 6.7e-18 95.5 92 54.3
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.3e-15 85.9 180 38.3
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.6e-14 84.3 85 55.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.6e-11 73.2 43 72.1
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.2e-09 68.2 88 43.2
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.7e-08 63.2 56 57.1


User provided reference genes

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