Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 4.3e-259 897.5 460 100.0
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 4.2e-190 668.3 456 74.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.1e-189 664.5 458 73.8
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.7e-186 655.2 454 74.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 6.9e-185 651.0 458 72.7
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.6e-184 649.0 458 72.7
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.0e-183 647.1 458 72.9
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-183 646.7 457 72.9
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.7e-183 646.4 473 69.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.2e-183 646.0 458 71.2
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-182 643.7 457 72.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-182 643.3 457 71.6
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.2e-182 642.1 458 73.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.2e-182 641.0 457 72.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.4e-180 636.7 457 71.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.4e-180 636.7 482 68.3
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-179 633.6 460 70.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-179 633.6 460 70.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 3.3e-179 632.1 452 72.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.2e-178 629.4 465 69.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 4.8e-178 628.2 462 70.3
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.1e-177 625.2 458 70.1
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.0e-176 622.9 461 70.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 6.5e-175 617.8 464 69.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.9e-174 616.3 457 69.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.5e-174 615.9 453 70.9
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 9.4e-174 614.0 457 68.5
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 9.4e-174 614.0 451 69.2
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 9.4e-174 614.0 451 68.5
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.1e-173 612.8 451 69.0
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.1e-173 612.8 426 73.9
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.0e-172 610.5 454 68.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.3e-172 609.4 456 68.0
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 4.0e-172 608.6 457 68.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.1e-171 607.1 444 69.1
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.5e-171 606.7 476 66.2
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.6e-171 605.9 453 69.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.6e-171 605.9 457 69.1
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.3e-170 603.6 453 69.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.7e-170 603.2 444 69.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.2e-170 602.8 456 68.6
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.2e-170 602.8 453 68.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 8.2e-170 600.9 454 67.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-169 600.1 459 68.2
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.1e-169 598.6 454 68.5
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 7.0e-169 597.8 453 67.5
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.0e-168 596.3 461 66.4
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.7e-168 595.9 462 67.1
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.5e-168 595.1 461 67.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.5e-168 595.1 461 66.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.5e-168 595.1 419 73.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 5.9e-168 594.7 456 68.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.0e-167 594.0 453 67.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.0e-167 594.0 459 66.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.3e-167 593.6 447 69.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.3e-167 593.6 451 68.1
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.7e-167 593.2 457 65.9
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.2e-167 592.8 454 67.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.9e-167 592.4 458 67.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.0e-167 591.7 445 67.6
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.0e-167 591.7 454 68.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 8.5e-167 590.9 467 64.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 3.2e-166 589.0 460 66.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 7.2e-166 587.8 460 66.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.2e-166 587.8 460 66.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 9.4e-166 587.4 458 65.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-165 587.0 460 66.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-165 587.0 460 66.3
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.2e-165 587.0 459 67.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.6e-165 586.6 479 65.1
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-165 586.6 460 67.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.6e-165 586.6 454 67.4
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.1e-165 586.3 455 66.8
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.7e-165 585.9 459 66.0
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.6e-165 585.5 459 66.4
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.6e-165 585.5 459 66.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.7e-165 585.1 479 65.1
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.7e-165 585.1 453 66.4
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 6.1e-165 584.7 457 65.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.0e-165 584.3 554 58.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-164 583.6 458 67.5
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-164 583.2 458 67.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-164 582.0 460 65.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 4.0e-164 582.0 459 67.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.2e-164 581.6 458 67.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 5.2e-164 581.6 457 65.4
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 6.8e-164 581.3 452 66.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-163 580.5 459 67.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.0e-163 579.7 459 65.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.6e-163 579.3 459 66.9
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.4e-163 578.9 459 67.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.2e-162 576.2 456 67.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-162 575.5 458 66.6
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.1e-161 573.9 407 71.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.4e-161 572.8 447 66.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.0e-161 571.2 458 65.7
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-160 570.5 454 66.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.6e-160 570.1 479 63.5
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-160 570.1 484 62.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.7e-160 569.3 404 71.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-158 563.9 479 62.6
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.9e-158 563.1 447 64.9
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.2e-158 562.0 391 73.1
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 7.2e-158 561.2 478 63.8
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.1e-157 559.7 489 60.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.0e-152 543.1 489 58.7
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 7.7e-152 541.2 457 60.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.9e-150 536.6 457 61.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.9e-150 536.6 455 59.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 9.5e-150 534.3 390 68.7
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.4e-147 525.8 453 58.5
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 9.8e-147 524.2 410 66.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.9e-146 522.7 404 66.6
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.9e-144 515.0 445 59.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-143 513.8 389 68.1
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.3e-143 513.1 453 57.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.0e-136 490.0 447 57.3
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.3e-135 486.5 446 57.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.6e-128 462.2 448 53.6
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 5.1e-127 458.8 389 60.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.9e-126 456.8 455 52.1
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.6e-126 455.3 455 52.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.3e-126 454.9 349 66.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 8.1e-125 451.4 445 52.6
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-122 442.6 454 50.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 9.6e-118 427.9 278 75.5
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.4e-116 424.1 446 54.5
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-113 412.9 434 54.4
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.5e-112 409.5 457 48.6
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.9e-105 387.1 321 64.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-99 367.5 397 51.4
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.6e-96 355.9 252 70.2
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-89 334.3 271 62.7
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-88 330.1 455 42.4
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.3e-86 322.8 312 59.3
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.6e-75 287.0 198 70.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.4e-65 254.6 313 50.2
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.1e-60 236.5 446 36.5
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.5e-59 233.4 158 75.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.0e-55 220.3 129 79.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.8e-52 211.1 158 67.1
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.3e-47 194.1 176 58.5
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.2e-46 191.8 195 54.9
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.2e-38 165.2 160 58.8
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.2e-37 161.0 121 69.4
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.7e-37 160.2 134 64.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.6e-33 146.4 120 65.0
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-31 141.4 94 70.2
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.7e-26 124.8 112 61.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.3e-26 124.4 77 75.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.2e-20 102.4 99 49.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.6e-16 90.5 81 55.6
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 8.1e-16 89.4 60 73.3
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.1e-15 89.0 56 80.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 9.2e-12 75.9 41 80.5
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-08 65.1 49 69.4
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 6.2e-08 63.2 79 46.8


User provided reference genes

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