Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024987 Daucus carota HOM05D001386 ORTHO05D035039 2.4e-53 211.8 104 100.0
DCAR_007801 Daucus carota HOM05D001386 ORTHO05D035039 3.1e-24 115.2 98 56.1
DCAR_032382 Daucus carota HOM05D002456 ORTHO05D045065 9.0e-24 113.6 98 55.1
ClCG06G017770 Citrullus lanatus HOM05D001386 ORTHO05D004014 1.8e-16 89.4 83 53.0
Aa31LG10G140 Aethionema arabicum HOM05D001386 ORTHO05D004014 2.4e-16 89.0 83 53.0
TPR.G33019 Trifolium pratense HOM05D001386 ORTHO05D035039 2.4e-16 89.0 100 51.0
Atru.chr9.1089 Acer truncatum HOM05D001386 ORTHO05D004014 3.1e-16 88.6 84 50.0
Ciclev10019526m.g Citrus clementina HOM05D001386 ORTHO05D004014 3.1e-16 88.6 84 51.2
Sp1g41760 Schrenkiella parvula HOM05D001386 ORTHO05D004014 3.1e-16 88.6 83 50.6
THA.LOC104810267 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 3.1e-16 88.6 83 51.8
TWI39G0283 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 4.1e-16 88.2 84 51.2
AL1G64380 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 5.3e-16 87.8 83 51.8
AT1G56110 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 5.3e-16 87.8 83 51.8
Carub.0001s4472 Capsella rubella HOM05D001386 ORTHO05D004014 5.3e-16 87.8 83 51.8
Cpa.g.sc2085.2 Carica papaya HOM05D001386 ORTHO05D004014 5.3e-16 87.8 84 50.0
Duzib205G1332 Durio zibethinus HOM05D001386 ORTHO05D004014 5.3e-16 87.8 83 51.8
Thhalv10011387m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 5.3e-16 87.8 83 51.8
RcHm_v2.0_Chr7g0190581 Rosa chinensis HOM05D001386 ORTHO05D004014 5.3e-16 87.8 84 50.0
TWI14G0111 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 5.3e-16 87.8 84 50.0
Gohir.D07G056700 Gossypium hirsutum HOM05D001386 ORTHO05D004014 6.9e-16 87.4 83 51.8
Gorai.001G060200 Gossypium raimondii HOM05D001386 ORTHO05D004014 6.9e-16 87.4 83 51.8
Prupe.5G153500 Prunus persica HOM05D001386 ORTHO05D004014 6.9e-16 87.4 84 50.0
PGR044G2092 Punica granatum HOM05D001386 ORTHO05D004014 9.0e-16 87.0 84 50.0
GSVIVG01008506001 Vitis vinifera HOM05D001386 ORTHO05D004014 9.0e-16 87.0 83 51.8
BcaB04g16920 Brassica carinata HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
BcaC08g43679 Brassica carinata HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
C06p10990 Brassica napus HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
BolC3t21638H Brassica oleracea HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
BraA08t32066Z Brassica rapa HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
BraSC56t46383Z Brassica rapa HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 50.6
MELO3C026228.2 Cucumis melo HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 51.8
CsaV3_1G000680 Cucumis sativus L. HOM05D001386 ORTHO05D004014 1.2e-15 86.7 83 51.8
Rhsim08G0188100 Rhododendron simsii HOM05D001386 ORTHO05D004014 1.2e-15 86.7 84 48.8
Duzib068G0731 Durio zibethinus HOM05D001386 ORTHO05D004014 1.5e-15 86.3 83 50.6
Eucgr.K02739 Eucalyptus grandis HOM05D001386 ORTHO05D004014 1.5e-15 86.3 84 50.0
FvH4_5g07871 Fragaria vesca HOM05D001386 ORTHO05D004014 1.5e-15 86.3 84 50.0
Manes.14G053300 Manihot esculenta HOM05D001386 ORTHO05D004014 1.5e-15 86.3 83 49.4
THA.LOC104816144 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 1.5e-15 86.3 83 50.6
ECA232G5020 Erigeron canadensis HOM05D001386 ORTHO05D004014 2.0e-15 85.9 84 48.8
TAR622G1164 Trochodendron aralioides HOM05D001386 ORTHO05D004014 2.0e-15 85.9 84 50.0
vmacro19217 Vaccinium macrocarpon HOM05D001386 ORTHO05D004014 2.0e-15 85.9 84 48.8
AL3G24530 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
AT3G12860 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
BcaC01g04038 Brassica carinata HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
A03p37840 Brassica napus HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
C03p45900 Brassica napus HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
BolC3t16867H Brassica oleracea HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
BraA03t12939Z Brassica rapa HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
CARHR045860 Cardamine hirsuta HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 50.6
ECA246G0967 Erigeron canadensis HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 49.4
Thhalv10004082m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
HanXRQChr16g0497801 Helianthus annuus HOM05D001386 ORTHO05D004014 2.6e-15 85.5 84 47.6
SHI26313 Sapria himalayana HOM05D001386 ORTHO05D004014 2.6e-15 85.5 84 48.8
Sp3g11000 Schrenkiella parvula HOM05D001386 ORTHO05D004014 2.6e-15 85.5 83 53.0
TAR374G0987 Trochodendron aralioides HOM05D001386 ORTHO05D004014 2.6e-15 85.5 84 48.8
Gohir.A07G052200 Gossypium hirsutum HOM05D001386 ORTHO05D004014 3.4e-15 85.1 83 50.6
Oeu056005.1 Olea europaea HOM05D001386 ORTHO05D004014 3.4e-15 85.1 84 50.0
Potri.012G095400 Populus trichocarpa HOM05D001386 ORTHO05D004014 3.4e-15 85.1 84 50.0
Migut.D01257 Erythranthe guttata HOM05D001386 ORTHO05D004014 4.5e-15 84.7 84 50.0
Migut.I00515 Erythranthe guttata HOM05D001386 ORTHO05D004014 4.5e-15 84.7 84 48.8
Manes.06G117900 Manihot esculenta HOM05D001386 ORTHO05D004014 4.5e-15 84.7 83 48.2
Thecc.03G126200 Theobroma cacao HOM05D001386 ORTHO05D004014 4.5e-15 84.7 83 49.4
Dinv04863 Davidia involucrata HOM05D001386 ORTHO05D004014 5.9e-15 84.3 84 48.8
HanXRQChr09g0273011 Helianthus annuus HOM05D001386 ORTHO05D004014 5.9e-15 84.3 84 48.8
Lsat_1_v5_gn_4_76561 Lactuca sativa HOM05D001386 ORTHO05D004014 5.9e-15 84.3 84 47.6
Zm00001eb016970 Zea mays HOM05D001386 ORTHO05D004014 5.9e-15 84.3 83 50.6
Zm00001eb394640 Zea mays HOM05D001386 ORTHO05D004014 5.9e-15 84.3 83 50.6
Actinidia15831 Actinidia chinensis HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 48.8
Aqoxy5G03467 Aquilegia oxysepala HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 47.6
CDE04G1039 Ceratophyllum demersum HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 50.0
DCAR_021613 Daucus carota HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 48.8
Dinv11152 Davidia involucrata HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 48.8
Gohir.A11G035800 Gossypium hirsutum HOM05D001386 ORTHO05D004014 7.7e-15 84.0 83 50.6
Gohir.D11G039400 Gossypium hirsutum HOM05D001386 ORTHO05D004014 7.7e-15 84.0 83 50.6
Gorai.007G042300 Gossypium raimondii HOM05D001386 ORTHO05D004014 7.7e-15 84.0 83 50.6
Lalb_Chr13g0297371 Lupinus albus HOM05D001386 ORTHO05D004014 7.7e-15 84.0 79 49.4
Potri.015G092900 Populus trichocarpa HOM05D001386 ORTHO05D004014 7.7e-15 84.0 84 48.8
Carub.0003s1222 Capsella rubella HOM05D001386 ORTHO05D004014 1.0e-14 83.6 83 51.8
HanXRQChr05g0153931 Helianthus annuus HOM05D001386 ORTHO05D004014 1.0e-14 83.6 84 47.6
Lalb_Chr06g0172261 Lupinus albus HOM05D001386 ORTHO05D004014 1.0e-14 83.6 79 48.1
Lalb_Chr07g0183301 Lupinus albus HOM05D001386 ORTHO05D004014 1.0e-14 83.6 79 48.1
SGA_v2.0_scaffold37G14621 Striga asiatica HOM05D001386 ORTHO05D004014 1.0e-14 83.6 84 48.8
Lsat_1_v5_gn_1_29280 Lactuca sativa HOM05D001386 ORTHO05D004014 1.3e-14 83.2 84 46.4
Sed0002077 Sechium edule HOM05D001386 ORTHO05D004014 1.3e-14 83.2 83 50.6
Lj9C476G21 Lonicera japonica HOM05D001386 ORTHO05D004014 1.7e-14 82.8 84 47.6
Nn3g16517 Nelumbo nucifera HOM05D001386 ORTHO05D004014 1.7e-14 82.8 84 48.8
BcaB04g18733 Brassica carinata HOM05D001386 ORTHO05D004014 2.2e-14 82.4 83 51.8
BcaB04g21172 Brassica carinata HOM05D001386 ORTHO05D004014 2.2e-14 82.4 83 51.8
CARHR087380 Cardamine hirsuta HOM05D001386 ORTHO05D004014 2.2e-14 82.4 83 51.8
Nitab4.5_0001338g0160 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 48.8
Nitab4.5_0013216g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 48.8
Os03g0352300 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 2.2e-14 82.4 83 49.4
PSO063G7389 Papaver somniferum HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 48.8
PSO782G3915 Papaver somniferum HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 48.8
Peaxi162Scf00673g00440 Petunia axillaris HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 48.8
SGA_v2.0_scaffold5G02873 Striga asiatica HOM05D001386 ORTHO05D004014 2.2e-14 82.4 84 46.4
Hma1.2p1_0014F.1_g009690 Hydrangea macrophylla HOM05D001386 ORTHO05D004014 2.9e-14 82.0 84 48.8
MD14G1159900 Malus domestica HOM05D001386 ORTHO05D004014 2.9e-14 82.0 83 48.2
Oeu023478.1 Olea europaea HOM05D001386 ORTHO05D004014 2.9e-14 82.0 83 48.2
CSS0000356 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 3.8e-14 81.6 84 45.2
Nn4g22384 Nelumbo nucifera HOM05D001386 ORTHO05D004014 3.8e-14 81.6 84 48.8
Psat4g063120 Pisum sativum HOM05D001386 ORTHO05D004014 3.8e-14 81.6 79 49.4
Sed0000726 Sechium edule HOM05D001386 ORTHO05D004014 3.8e-14 81.6 83 49.4
Lj2g0001549 Lotus japonicus HOM05D001386 ORTHO05D004014 5.0e-14 81.3 79 50.6
Lalb_Chr12g0202131 Lupinus albus HOM05D001386 ORTHO05D004014 5.0e-14 81.3 79 49.4
MBI15_g10562_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 5.0e-14 81.3 84 48.8
HPP92_024996 Vanilla planifolia HOM05D001386 ORTHO05D004014 5.0e-14 81.3 84 46.4
arahy.Tifrunner.gnm1.ann1.45I9WG Arachis hypogaea HOM05D001386 ORTHO05D004014 6.5e-14 80.9 79 50.6
arahy.Tifrunner.gnm1.ann1.96UIHW Arachis hypogaea HOM05D001386 ORTHO05D004014 6.5e-14 80.9 79 50.6
arahy.Tifrunner.gnm1.ann1.T2LSLY Arachis hypogaea HOM05D001386 ORTHO05D004014 8.5e-14 80.5 79 50.6
arahy.Tifrunner.gnm1.ann1.W1WWEB Arachis hypogaea HOM05D001386 ORTHO05D004014 8.5e-14 80.5 79 50.6
CSS0012516 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 8.5e-14 80.5 84 44.0
Cc04_g10000 Coffea canephora HOM05D001386 ORTHO05D004014 8.5e-14 80.5 84 47.6
COL.COLO4_28077 Corchorus olitorius HOM05D001386 ORTHO05D004014 8.5e-14 80.5 83 48.2
Thhalv10020558m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 8.5e-14 80.5 83 50.6
Glyma.07G102600 Glycine max HOM05D001386 ORTHO05D004014 8.5e-14 80.5 79 49.4
Solyc01g100570.4 Solanum lycopersicum HOM05D001386 ORTHO05D004014 8.5e-14 80.5 84 47.6
Sopen01g044070 Solanum pennellii HOM05D001386 ORTHO05D004014 8.5e-14 80.5 84 47.6
MBI11_g06762_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.1e-13 80.1 84 47.6
Nitab4.5_0000155g0130 Nicotiana tabacum HOM05D001386 ORTHO05D004014 1.1e-13 80.1 84 47.6
Nitab4.5_0013308g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 1.1e-13 80.1 84 47.6
Sc22g0004190 Simmondsia chinensis HOM05D001386 ORTHO05D004014 1.1e-13 80.1 85 45.9
MBI10_g21539_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D010673 1.4e-13 79.7 84 47.6
PGSC0003DMG400002765 Solanum tuberosum HOM05D001386 ORTHO05D004014 1.4e-13 79.7 84 48.8
CAN.G1076.18 Capsicum annuum HOM05D001386 ORTHO05D004014 1.9e-13 79.3 84 48.8
unitig_22.g5753 Utricularia gibba HOM05D001386 ORTHO05D004014 1.9e-13 79.3 83 44.6
unitig_66.g29100 Utricularia gibba HOM05D001386 ORTHO05D004014 1.9e-13 79.3 83 44.6
unitig_736.g23007 Utricularia gibba HOM05D001386 ORTHO05D004014 1.9e-13 79.3 83 44.6
MSTRG.9320 Avicennia marina HOM05D001386 ORTHO05D004014 2.5e-13 79.0 84 44.0
CiPaw.12G037600 Carya illinoinensis HOM05D001386 ORTHO05D004014 2.5e-13 79.0 83 47.0
MD06G1145200 Malus domestica HOM05D001386 ORTHO05D004014 2.5e-13 79.0 83 47.0
PSO017G5462 Papaver somniferum HOM05D001386 ORTHO05D004014 2.5e-13 79.0 84 48.8
DCAR_016408 Daucus carota HOM05D001386 ORTHO05D004014 3.2e-13 78.6 84 47.6
Lj9A707T56 Lonicera japonica HOM05D001386 ORTHO05D004014 3.2e-13 78.6 84 44.0
PSO478G0383 Papaver somniferum HOM05D001386 ORTHO05D004014 4.2e-13 78.2 84 48.8
BcaB06g25506 Brassica carinata HOM05D001386 ORTHO05D004014 7.2e-13 77.4 83 49.4
CSS0038009 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 7.2e-13 77.4 84 44.0
Cfa018857 Carpinus fangiana HOM05D001386 ORTHO05D004014 7.2e-13 77.4 83 45.8
Haze_07241 Corylus avellana HOM05D001386 ORTHO05D004014 7.2e-13 77.4 83 45.8
Glyma.05G046400 Glycine max HOM05D001386 ORTHO05D004014 7.2e-13 77.4 79 49.4
Glyma.17G128400 Glycine max HOM05D001386 ORTHO05D004014 7.2e-13 77.4 79 49.4
Lj4g0019980 Lotus japonicus HOM05D001386 ORTHO05D004014 7.2e-13 77.4 79 49.4
SalBow1G2492 Salvia bowleyana HOM05D001386 ORTHO05D004014 7.2e-13 77.4 84 44.0
A02p36500 Brassica napus HOM05D001386 ORTHO05D004014 9.4e-13 77.0 83 48.2
BraA02t08645Z Brassica rapa HOM05D001386 ORTHO05D004014 9.4e-13 77.0 83 48.2
Os07g0661800 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 9.4e-13 77.0 83 47.0
VMungo1080G0898 Vigna mungo HOM05D001386 ORTHO05D004014 9.4e-13 77.0 79 48.1
C02p55460 Brassica napus HOM05D001386 ORTHO05D004014 1.2e-12 76.6 83 48.2
BolC2t11602H Brassica oleracea HOM05D001386 ORTHO05D004014 1.2e-12 76.6 83 48.2
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 2.1e-12 75.9 84 45.2
CiPaw.11G009700 Carya illinoinensis HOM05D001386 ORTHO05D004014 2.1e-12 75.9 83 45.8
Medtr4g103790 Medicago truncatula HOM05D001386 ORTHO05D004014 2.7e-12 75.5 79 48.1
QL10p004371 Quercus lobata HOM05D001386 ORTHO05D004014 3.6e-12 75.1 83 47.0
Sc22g0003870 Simmondsia chinensis HOM05D001386 ORTHO05D004014 3.6e-12 75.1 85 44.7
TPR.G30017 Trifolium pratense HOM05D001386 ORTHO05D004014 6.1e-12 74.3 79 44.3
BcaB07g30088 Brassica carinata HOM05D001386 ORTHO05D004014 7.9e-12 73.9 85 47.1
Pp3c16_5220 Physcomitrium patens HOM05D001386 ORTHO05D004014 7.9e-12 73.9 84 44.0
Phvul.003G209500 Phaseolus vulgaris HOM05D001386 ORTHO05D004014 1.4e-11 73.2 79 45.6
ATR0686G022 Amborella trichopoda HOM05D001386 ORTHO05D004014 1.8e-11 72.8 84 40.5
MBI15_g03892_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 2.3e-11 72.4 81 46.9
Pp3c25_6350 Physcomitrium patens HOM05D001386 ORTHO05D004014 2.3e-11 72.4 84 41.7
Aqoxy3G02028 Aquilegia oxysepala HOM05D001386 ORTHO05D010673 3.0e-11 72.0 84 41.7
Mapoly0069s0034 Marchantia polymorpha HOM05D001386 ORTHO05D004014 3.9e-11 71.6 83 43.4
Hund10178 Selenicereus undatus HOM05D001386 ORTHO05D004014 5.1e-11 71.2 84 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2478 Anthoceros agrestis HOM05D001386 ORTHO05D004014 6.7e-11 70.9 84 36.9
CBR_g149 Chara braunii HOM05D001386 ORTHO05D004014 8.8e-11 70.5 84 40.5
EL10As4g23419 Beta vulgaris HOM05D001386 ORTHO05D004014 2.5e-10 68.9 67 46.3
Ca_00918_v3 Cicer arietinum L. HOM05D001386 ORTHO05D004014 4.3e-10 68.2 73 46.6
Hund02424 Selenicereus undatus HOM05D001386 ORTHO05D004014 7.4e-10 67.4 84 41.7
MBI13_g04773_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 2.2e-09 65.9 104 38.5
Ah.02g115290 Amaranthus hybridus HOM05D001386 ORTHO05D004014 2.8e-09 65.5 58 51.7
Sp2g17860 Schrenkiella parvula HOM05D001386 ORTHO05D004014 4.8e-09 64.7 86 46.5
SMO353G0194 Selaginella moellendorffii HOM05D001386 ORTHO05D004014 8.2e-09 63.9 84 35.7
AUR62021844 Chenopodium quinoa HOM05D001386 ORTHO05D004014 1.8e-08 62.8 67 40.3
AUR62012809 Chenopodium quinoa HOM05D001386 ORTHO05D004014 1.2e-07 60.1 67 38.8
AUR62025915 Chenopodium quinoa HOM05D001386 ORTHO05D004014 1.2e-07 60.1 67 38.8
AUR62029640 Chenopodium quinoa HOM05D001386 ORTHO05D004014 1.2e-07 60.1 67 38.8
MCO16G544 Micromonas commoda HOM05D001386 ORTHO05D004014 1.2e-07 60.1 84 36.9
DCAR_020403 Daucus carota HOM05D001386 ORTHO05D000074 3.4e-07 58.5 65 43.1
TPR.G12471 Trifolium pratense HOM05D002456 ORTHO05D045065 1.3e-06 56.6 51 49.0
BolC9t54832H Brassica oleracea HOM05D001006 ORTHO05D010673 3.8e-06 55.1 68 39.7
C03p04850 Brassica napus HOM05D001006 ORTHO05D010673 8.5e-06 53.9 68 39.7


User provided reference genes

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