Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024974 Daucus carota HOM05D000010 ORTHO05D000063 4.0e-139 498.0 246 100.0
Lj2C242T24 Lonicera japonica HOM05D000010 ORTHO05D000063 4.3e-48 195.7 253 46.2
vmacro00343 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 5.2e-46 188.7 248 46.8
Rhsim11G0012800 Rhododendron simsii HOM05D000010 ORTHO05D000063 7.5e-45 184.9 247 46.2
Haze_08265 Corylus avellana HOM05D000010 ORTHO05D000063 3.7e-44 182.6 250 43.2
CSS0042675 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.5e-42 176.0 249 44.6
CSS0047389 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.5e-42 176.0 249 44.6
Hma1.2p1_0585F.1_g183610 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 4.6e-42 175.6 246 42.7
Atru.chr6.1753 Acer truncatum HOM05D000010 ORTHO05D000063 1.0e-41 174.5 248 43.5
MD06G1031700 Malus domestica HOM05D000010 ORTHO05D000063 1.0e-41 174.5 250 43.2
Sabra01G0112800 Salix brachista HOM05D000010 ORTHO05D000063 1.0e-41 174.5 249 44.6
FAN18G2653 Fragaria x ananassa HOM05D000010 ORTHO05D000063 3.9e-41 172.6 249 41.4
FAN13G2796 Fragaria x ananassa HOM05D000010 ORTHO05D000063 6.6e-41 171.8 249 41.8
Potri.001G144400 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.5e-40 170.6 249 43.4
CiPaw.11G091300 Carya illinoinensis HOM05D000010 ORTHO05D000063 3.3e-40 169.5 248 41.9
FAN08G0157 Fragaria x ananassa HOM05D000010 ORTHO05D000063 1.6e-39 167.2 249 41.4
GSVIVG01013182001 Vitis vinifera HOM05D000010 ORTHO05D000063 3.6e-39 166.0 246 41.5
Cfa012412 Carpinus fangiana HOM05D000010 ORTHO05D000063 8.1e-39 164.9 229 41.9
TAR636G1308 Trochodendron aralioides HOM05D000010 ORTHO05D000063 8.1e-39 164.9 262 38.5
Actinidia25951 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.1e-38 164.5 250 44.4
Manes.15G169500 Manihot esculenta HOM05D000010 ORTHO05D000063 1.1e-38 164.5 246 41.9
Potri.003G089800 Populus trichocarpa HOM05D000010 ORTHO05D000063 1.8e-38 163.7 248 41.1
FAN04G0735 Fragaria x ananassa HOM05D000010 ORTHO05D000063 3.1e-38 162.9 249 40.6
TWI81G0881 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.9e-36 156.4 246 39.0
CSS0047135 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 3.2e-35 152.9 213 46.5
DCAR_008284 Daucus carota HOM05D000010 ORTHO05D000063 2.8e-31 139.8 205 42.9
DCAR_008282 Daucus carota HOM05D000010 ORTHO05D000063 5.2e-30 135.6 205 42.4
Nn1g00574 Nelumbo nucifera HOM05D000010 ORTHO05D000063 5.2e-30 135.6 262 35.9
FvH4_5g21670 Fragaria vesca HOM05D000010 ORTHO05D000063 1.2e-29 134.4 217 39.2
Hma1.2p1_2785F.1_g328430 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 1.2e-29 134.4 201 43.8
RcHm_v2.0_Chr7g0209171 Rosa chinensis HOM05D000010 ORTHO05D000063 2.6e-29 133.3 217 39.2
Nitab4.5_0000535g0120 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.7e-28 130.6 241 35.3
Eucgr.E00298 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.2e-28 130.2 204 39.7
TAR629G1580 Trochodendron aralioides HOM05D000010 ORTHO05D000063 4.9e-28 129.0 261 36.4
Ciclev10031966m.g Citrus clementina HOM05D000010 ORTHO05D000063 5.4e-27 125.6 216 38.0
Eucgr.D02182 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.7e-26 123.2 247 34.4
TWI15G0592 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 7.8e-26 121.7 230 40.0
Nitab4.5_0007026g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.3e-25 120.9 268 31.3
Duzib205G1785 Durio zibethinus HOM05D000010 ORTHO05D000063 1.7e-25 120.6 208 42.3
Peaxi162Scf00695g00512 Petunia axillaris HOM05D000010 ORTHO05D000063 3.9e-25 119.4 211 37.0
CiPaw.12G061800 Carya illinoinensis HOM05D000010 ORTHO05D000063 6.6e-25 118.6 213 36.2
CAN.G1659.1 Capsicum annuum HOM05D000010 ORTHO05D000063 8.7e-25 118.2 212 36.8
Lj8A291T56 Lonicera japonica HOM05D000010 ORTHO05D000063 1.5e-24 117.5 200 40.5
Sabra03G0059700 Salix brachista HOM05D000010 ORTHO05D000063 4.3e-24 115.9 255 35.3
QL12p006208 Quercus lobata HOM05D000010 ORTHO05D000063 9.6e-24 114.8 215 38.6
PGSC0003DMG400017505 Solanum tuberosum HOM05D000010 ORTHO05D000063 9.6e-24 114.8 209 37.3
Cc08_g02440 Coffea canephora HOM05D000010 ORTHO05D000063 1.3e-23 114.4 213 39.4
Sopen08g025690 Solanum pennellii HOM05D000010 ORTHO05D000063 1.3e-23 114.4 208 37.0
CsaV3_3G049360 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.6e-23 114.0 220 35.0
Thecc.03G230900 Theobroma cacao HOM05D000010 ORTHO05D000063 1.6e-23 114.0 212 41.0
Glyma.05G113000 Glycine max HOM05D000010 ORTHO05D000063 6.2e-23 112.1 211 35.5
Lj4g0010062 Lotus japonicus HOM05D000010 ORTHO05D000063 6.2e-23 112.1 219 35.6
arahy.Tifrunner.gnm1.ann1.76LABN Arachis hypogaea HOM05D000010 ORTHO05D000063 1.4e-22 110.9 210 35.7
arahy.Tifrunner.gnm1.ann1.U16Y2L Arachis hypogaea HOM05D000010 ORTHO05D000063 1.4e-22 110.9 210 35.7
PGR031G0073 Punica granatum HOM05D000010 ORTHO05D000063 1.4e-22 110.9 216 41.2
VMungo0251G0906 Vigna mungo HOM05D000010 ORTHO05D000063 1.8e-22 110.5 221 35.7
Prupe.5G040400 Prunus persica HOM05D000010 ORTHO05D000063 2.4e-22 110.2 185 41.6
Nitab4.5_0003100g0030 Nicotiana tabacum HOM05D000010 ORTHO05D000063 4.0e-22 109.4 214 33.6
EL10Ac5g12170 Beta vulgaris HOM05D000010 ORTHO05D000063 6.9e-22 108.6 218 37.2
Glyma.17G154100 Glycine max HOM05D000010 ORTHO05D000063 6.9e-22 108.6 217 34.6
Phvul.003G229600 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 1.2e-21 107.8 216 34.7
Dinv28933 Davidia involucrata HOM05D000010 ORTHO05D000063 2.6e-21 106.7 130 50.8
Solyc08g077110.4 Solanum lycopersicum HOM05D000010 ORTHO05D000063 5.8e-21 105.5 208 35.6
Nitab4.5_0014378g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 9.9e-21 104.8 214 31.3
Sc01g0007580 Simmondsia chinensis HOM05D000010 ORTHO05D000063 9.9e-21 104.8 211 39.3
ClCG09G012160 Citrullus lanatus HOM05D000010 ORTHO05D000063 1.3e-20 104.4 206 35.4
MELO3C003390.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.3e-20 104.4 216 35.6
Gorai.008G227800 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.7e-20 104.0 210 38.6
MD16G1276900 Malus domestica HOM05D000010 ORTHO05D000063 2.2e-20 103.6 189 38.1
Duzib084G0346 Durio zibethinus HOM05D000010 ORTHO05D000063 3.8e-20 102.8 211 39.8
Lj2g0012727 Lotus japonicus HOM05D000010 ORTHO05D000063 4.9e-20 102.4 208 36.5
CAN.G201.16 Capsicum annuum HOM05D000010 ORTHO05D000063 6.4e-20 102.1 215 33.0
Gohir.D12G212200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 6.4e-20 102.1 210 38.1
Gohir.A08G158200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 8.4e-20 101.7 204 38.7
Sopen06g021280 Solanum pennellii HOM05D000010 ORTHO05D000063 8.4e-20 101.7 214 34.1
Gohir.A12G209500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.2e-19 99.8 211 37.4
Solyc06g061080.3 Solanum lycopersicum HOM05D000010 ORTHO05D000063 3.2e-19 99.8 213 33.3
Ah.12g054600 Amaranthus hybridus HOM05D000010 ORTHO05D000063 5.4e-19 99.0 207 38.2
HanXRQChr03g0085841 Helianthus annuus HOM05D000010 ORTHO05D000063 5.4e-19 99.0 176 39.2
Gohir.D08G178500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 9.3e-19 98.2 202 37.6
Gorai.004G186700 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.6e-18 97.4 202 38.1
Actinidia14817 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.1e-18 97.1 197 38.6
Ca_22063_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 2.7e-18 96.7 216 34.3
Gohir.A03G002000 Gossypium hirsutum HOM05D000010 ORTHO05D000063 4.6e-18 95.9 203 36.5
Peaxi162Scf00102g00626 Petunia axillaris HOM05D000010 ORTHO05D000063 4.6e-18 95.9 209 34.4
Aqoxy3G02458 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 7.9e-18 95.1 265 32.5
ECA233G4398 Erigeron canadensis HOM05D000010 ORTHO05D000063 1.3e-17 94.4 185 38.4
Medtr5g014300 Medicago truncatula HOM05D000010 ORTHO05D000063 1.3e-17 94.4 203 33.5
ECA240G3972 Erigeron canadensis HOM05D000010 ORTHO05D000063 1.8e-17 94.0 201 37.8
Lsat_1_v5_gn_6_87981 Lactuca sativa HOM05D000010 ORTHO05D000063 3.0e-17 93.2 201 34.8
Hund14418 Selenicereus undatus HOM05D000010 ORTHO05D000063 6.7e-17 92.0 217 34.1
CANSAT21G1193 Cannabis sativa HOM05D000010 ORTHO05D000063 1.1e-16 91.3 213 35.7
Gorai.003G180600 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.3e-16 89.7 203 35.0
PSO782G4105 Papaver somniferum HOM05D000010 ORTHO05D000063 3.3e-16 89.7 258 27.9
Gohir.D03G170300 Gossypium hirsutum HOM05D000010 ORTHO05D000063 4.3e-16 89.4 203 35.0
TPR.G28664 Trifolium pratense HOM05D000010 ORTHO05D000063 4.3e-16 89.4 209 32.5
AUR62018752 Chenopodium quinoa HOM05D000010 ORTHO05D000063 5.6e-16 89.0 218 34.9
AUR62007247 Chenopodium quinoa HOM05D000010 ORTHO05D000063 9.6e-16 88.2 220 35.9
Psat2g173520 Pisum sativum HOM05D000010 ORTHO05D000063 9.6e-16 88.2 204 32.4
Ca_24645_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 2.1e-15 87.0 205 34.1
MBI04_g22955_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 2.1e-15 87.0 263 30.4
PSO063G0265 Papaver somniferum HOM05D000010 ORTHO05D000063 2.1e-15 87.0 258 27.5
Lalb_Chr16g0379181 Lupinus albus HOM05D000010 ORTHO05D000063 6.2e-15 85.5 194 36.6
PGR042G2407 Punica granatum HOM05D000010 ORTHO05D000063 6.2e-15 85.5 176 35.2
COL.COLO4_17071 Corchorus olitorius HOM05D000010 ORTHO05D000063 2.4e-14 83.6 218 36.7
arahy.Tifrunner.gnm1.ann1.CSHQ77 Arachis hypogaea HOM05D000010 ORTHO05D000063 3.1e-14 83.2 217 34.1
Medtr4g098630 Medicago truncatula HOM05D000010 ORTHO05D000063 1.5e-13 80.9 209 33.0
TPR.G7815 Trifolium pratense HOM05D000010 ORTHO05D000063 1.5e-13 80.9 202 30.7
arahy.Tifrunner.gnm1.ann1.1I167B Arachis hypogaea HOM05D000010 ORTHO05D000063 1.3e-12 77.8 179 34.6
Sp2g11420 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.8e-12 76.3 186 32.3
BcaC06g31464 Brassica carinata HOM05D000010 ORTHO05D000063 1.4e-11 74.3 150 34.7
Sed0001300 Sechium edule HOM05D000010 ORTHO05D000063 1.9e-11 73.9 130 40.8
ATR0049G038 Amborella trichopoda HOM05D000010 ORTHO05D000063 3.2e-11 73.2 258 26.7
Lsat_1_v5_gn_6_64840 Lactuca sativa HOM05D000010 ORTHO05D000063 5.5e-11 72.4 200 30.5
BcaC06g34368 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-10 71.2 137 35.8
C07p29800 Brassica napus HOM05D000010 ORTHO05D000063 1.2e-10 71.2 137 35.8
BolC7t43531H Brassica oleracea HOM05D000010 ORTHO05D000063 1.2e-10 71.2 137 35.8
AL8G11760 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.5e-10 69.7 167 35.3
Oeu001188.1 Olea europaea HOM05D000010 ORTHO05D000063 3.5e-10 69.7 208 32.2
BraA02t08029Z Brassica rapa HOM05D000010 ORTHO05D000063 6.0e-10 68.9 184 29.3
CARHR224750 Cardamine hirsuta HOM05D000010 ORTHO05D000063 6.0e-10 68.9 207 30.9
C02p47580 Brassica napus HOM05D000010 ORTHO05D000063 7.9e-10 68.6 184 29.3
BolC2t10797H Brassica oleracea HOM05D000010 ORTHO05D000063 7.9e-10 68.6 184 29.3
FAN15G0278 Fragaria x ananassa HOM05D000349 ORTHO05D011776 7.9e-10 68.6 78 46.2
A06p45820 Brassica napus HOM05D000010 ORTHO05D000063 1.0e-09 68.2 150 34.0
BraA06t27452Z Brassica rapa HOM05D000010 ORTHO05D000063 1.0e-09 68.2 150 34.0
AL7G36520 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 1.8e-09 67.4 203 30.0
A02p30110 Brassica napus HOM05D000010 ORTHO05D000063 1.8e-09 67.4 184 29.3
CARHR174990 Cardamine hirsuta HOM05D000010 ORTHO05D000063 2.3e-09 67.0 150 33.3
AT5G46590 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 3.9e-09 66.2 158 32.9
Thhalv10001200m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 5.1e-09 65.9 150 30.7
AT4G17980 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 6.7e-09 65.5 202 29.2
Carub.0007s2336 Capsella rubella HOM05D000010 ORTHO05D000063 8.7e-09 65.1 170 32.9
Cpa.g.sc90.52 Carica papaya HOM05D000010 ORTHO05D000063 8.7e-09 65.1 208 28.4
Oeu005299.1 Olea europaea HOM05D000010 ORTHO05D000063 1.1e-08 64.7 195 33.3
Aa31LG9G6300 Aethionema arabicum HOM05D000010 ORTHO05D000063 1.9e-08 63.9 168 31.5
THA.LOC104806103 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.5e-08 63.5 167 32.9
Sp7g16130 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.3e-08 63.2 161 34.8
C01p11810 Brassica napus HOM05D000010 ORTHO05D000063 5.6e-08 62.4 184 33.2
BolC1t01156H Brassica oleracea HOM05D000010 ORTHO05D000063 7.4e-08 62.0 184 32.6
BcaC09g51564 Brassica carinata HOM05D000010 ORTHO05D000063 9.6e-08 61.6 184 32.6
BcaNung00039 Brassica carinata HOM05D000010 ORTHO05D000063 9.6e-08 61.6 176 33.0
Aa31LG6G730 Aethionema arabicum HOM05D000010 ORTHO05D000063 1.6e-07 60.8 139 35.3
HanXRQChr13g0416701 Helianthus annuus HOM05D000010 ORTHO05D000063 3.7e-07 59.7 156 32.1
THA.LOC104827746 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 3.7e-07 59.7 138 39.9
A01p10010 Brassica napus HOM05D000010 ORTHO05D000063 1.1e-06 58.2 184 31.0
BraA01t00945Z Brassica rapa HOM05D000010 ORTHO05D000063 1.1e-06 58.2 184 31.0
Thhalv10027064m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 1.1e-06 58.2 180 30.6
A03p50910 Brassica napus HOM05D000010 ORTHO05D000063 1.4e-06 57.8 180 31.1
Carub.0008s0132 Capsella rubella HOM05D000010 ORTHO05D000063 1.4e-06 57.8 146 31.5
BcaC06g33613 Brassica carinata HOM05D000010 ORTHO05D000063 1.8e-06 57.4 180 31.1
C07p49330 Brassica napus HOM05D000010 ORTHO05D000063 1.8e-06 57.4 180 31.1
BolC7t45440H Brassica oleracea HOM05D000010 ORTHO05D000063 1.8e-06 57.4 180 31.1
BraA03t14178Z Brassica rapa HOM05D000010 ORTHO05D000063 2.4e-06 57.0 180 31.1
BcaC03g16864 Brassica carinata HOM05D000010 ORTHO05D000063 4.0e-06 56.2 179 27.4


User provided reference genes

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