Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 3.4e-65 251.5 126 100.0
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 8.4e-32 140.6 129 62.0
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 2.1e-30 136.0 131 57.3
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 2.7e-30 135.6 129 59.7
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 4.6e-30 134.8 129 58.9
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 4.6e-30 134.8 129 58.9
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 1.0e-29 133.7 130 55.4
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 2.3e-29 132.5 129 60.5
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.3e-29 132.5 129 60.5
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 3.0e-29 132.1 131 58.8
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 5.1e-29 131.3 126 60.3
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 8.6e-29 130.6 126 54.8
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 1.1e-28 130.2 129 59.7
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.5e-28 129.8 129 55.0
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.5e-28 129.8 129 55.0
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 1.5e-28 129.8 132 56.8
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.5e-28 129.8 129 58.9
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 1.9e-28 129.4 129 57.4
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 2.5e-28 129.0 117 58.1
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 2.5e-28 129.0 131 58.8
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 3.3e-28 128.6 111 59.5
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 3.3e-28 128.6 130 59.2
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 3.3e-28 128.6 111 60.4
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 4.3e-28 128.3 129 58.1
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.6e-28 127.9 129 54.3
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.6e-28 127.9 129 54.3
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 5.6e-28 127.9 129 58.9
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 5.6e-28 127.9 136 55.9
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 7.3e-28 127.5 129 56.6
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 9.6e-28 127.1 129 57.4
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 9.6e-28 127.1 111 60.4
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 9.6e-28 127.1 112 59.8
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 1.2e-27 126.7 131 54.2
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.2e-27 126.7 131 53.4
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 1.6e-27 126.3 131 54.2
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 1.6e-27 126.3 131 54.2
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 1.6e-27 126.3 130 58.5
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 2.1e-27 125.9 126 56.3
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 2.8e-27 125.6 132 53.8
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.8e-27 125.6 127 54.3
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 4.7e-27 124.8 110 61.8
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 8.1e-27 124.0 126 57.1
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.1e-26 123.6 127 53.5
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.1e-26 123.6 127 53.5
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 1.1e-26 123.6 133 55.6
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.1e-26 123.6 128 55.5
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 1.4e-26 123.2 124 54.8
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 1.4e-26 123.2 128 53.1
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 1.4e-26 123.2 138 53.6
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 1.4e-26 123.2 133 55.6
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.4e-26 123.2 132 55.3
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.8e-26 122.9 132 53.8
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 2.4e-26 122.5 137 54.7
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 3.1e-26 122.1 138 53.6
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 4.0e-26 121.7 111 59.5
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 4.0e-26 121.7 130 56.9
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 5.2e-26 121.3 132 54.5
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 2.0e-25 119.4 132 50.8
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 3.4e-25 118.6 127 51.2
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 4.4e-25 118.2 128 53.1
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 5.8e-25 117.9 136 52.9
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 7.6e-25 117.5 94 62.8
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 7.6e-25 117.5 128 48.4
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 9.9e-25 117.1 127 52.8
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.3e-24 116.7 139 51.1
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 1.3e-24 116.7 127 49.6
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.7e-24 116.3 113 54.0
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 2.2e-24 115.9 131 53.4
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.2e-24 115.9 128 54.7
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 2.9e-24 115.5 112 55.4
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 2.9e-24 115.5 132 52.3
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 2.9e-24 115.5 131 50.4
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.8e-24 115.2 129 52.7
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.8e-24 115.2 129 52.7
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 4.9e-24 114.8 111 52.3
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 4.9e-24 114.8 129 51.2
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 1.9e-23 112.8 142 47.9
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 5.4e-23 111.3 136 48.5
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.6e-22 109.8 134 47.0
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 1.0e-21 107.1 92 60.9
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.3e-21 106.7 130 50.0
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.7e-21 106.3 112 49.1
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 3.0e-21 105.5 112 49.1
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 1.5e-20 103.2 135 45.2
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.3e-20 101.7 131 49.6
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 2.1e-19 99.4 128 43.8
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 8.1e-19 97.4 108 50.9
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 8.1e-19 97.4 108 50.9
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 8.1e-19 97.4 127 44.1
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 1.8e-18 96.3 122 45.9
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 1.8e-18 96.3 108 50.0
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 6.9e-18 94.4 140 42.9
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 9.0e-18 94.0 132 43.9
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 5.8e-17 91.3 129 42.6
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 7.6e-17 90.9 128 41.4
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 9.9e-17 90.5 108 49.1
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 9.9e-17 90.5 128 44.5
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 9.9e-17 90.5 130 45.4
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 1.3e-16 90.1 128 43.8
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 1.7e-16 89.7 129 41.1
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 2.2e-16 89.4 129 41.1
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 2.2e-16 89.4 129 41.1
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 6.4e-16 87.8 109 44.0
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 6.4e-16 87.8 109 44.0
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 2.4e-15 85.9 95 50.5
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 3.2e-15 85.5 126 42.9
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 3.2e-15 85.5 129 43.4
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 1.3e-13 80.1 111 45.0
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 1.5e-12 76.6 92 45.7
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.3e-12 75.1 104 47.1
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 6.2e-11 71.2 128 36.7
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 1.8e-10 69.7 72 56.9
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.4e-09 65.5 42 71.4
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.3e-08 63.5 86 46.5
VMungo1309G1696 Vigna mungo HOM05D001618 ORTHO05D001486 2.4e-07 59.3 114 31.6
Pp3c1_8870 Physcomitrium patens HOM05D006772 ORTHO05D008367 3.2e-07 58.9 141 30.5
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 5.5e-07 58.2 92 39.1
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.6e-06 56.6 84 45.2
Phvul.009G223900 Phaseolus vulgaris HOM05D001618 ORTHO05D001486 1.6e-06 56.6 88 37.5
Ah.09g229040 Amaranthus hybridus HOM05D001618 ORTHO05D001486 2.7e-06 55.8 103 35.0
Mapoly0047s0021 Marchantia polymorpha HOM05D001618 ORTHO05D001486 4.6e-06 55.1 93 32.3
Sc18g0002820 Simmondsia chinensis HOM05D001618 ORTHO05D001486 7.9e-06 54.3 88 36.4


User provided reference genes

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