Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-43 179.5 94 100.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-38 159.8 94 88.3
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-38 159.8 94 88.3
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-24 116.3 95 63.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-24 115.9 95 62.1
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 3.1e-23 111.7 88 63.6
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.5e-19 98.2 97 57.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.8e-18 95.9 83 59.0
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.9e-18 94.7 96 57.3
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 8.7e-18 93.6 97 53.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-17 92.8 98 48.0
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-17 92.8 82 56.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.5e-17 92.0 82 56.1
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.3e-17 91.3 83 57.8
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 5.7e-17 90.9 83 59.0
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.2e-16 89.0 82 56.1
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 2.8e-16 88.6 94 48.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-16 88.2 95 52.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.8e-16 87.8 83 53.0
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.8e-16 87.8 83 53.0
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.3e-16 87.4 92 54.3
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-15 86.7 60 66.7
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 92 52.2
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.4e-15 86.3 96 51.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-15 85.5 95 51.6
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 3.1e-15 85.1 93 51.6
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 5.3e-15 84.3 94 51.1
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.0e-15 83.6 95 50.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-14 83.2 92 53.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.2e-14 83.2 55 63.6
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.5e-14 82.8 81 53.1
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-14 82.8 81 51.9
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-14 82.8 91 46.2
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.0e-14 82.4 83 50.6
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 2.0e-14 82.4 93 48.4
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.6e-14 82.0 83 50.6
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.6e-14 82.0 84 50.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 2.6e-14 82.0 83 50.6
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-14 81.6 81 50.6
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-14 81.6 93 46.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.4e-14 81.6 91 49.5
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 4.5e-14 81.3 94 50.0
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 4.5e-14 81.3 80 46.2
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.9e-14 80.9 58 60.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.9e-14 80.9 57 63.2
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.9e-14 80.9 82 47.6
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.9e-14 80.9 93 44.1
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.7e-14 80.5 71 49.3
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 7.7e-14 80.5 70 57.1
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 90 52.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 90 52.2
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.0e-13 80.1 96 47.9
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 93 43.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 78 55.1
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.3e-13 79.7 94 47.9
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-13 79.3 90 46.7
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.7e-13 79.3 85 48.2
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.7e-13 79.3 93 48.4
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.9e-13 78.6 47 70.2
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.9e-13 78.6 47 70.2
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 87 46.0
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 87 46.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.8e-13 78.2 94 43.6
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 5.0e-13 77.8 84 51.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 5.0e-13 77.8 54 66.7
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-13 77.8 94 50.0
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-13 77.8 97 46.4
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.0e-13 77.8 94 50.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-13 77.8 87 49.4
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 6.5e-13 77.4 83 47.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 83 47.0
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.5e-13 77.4 97 46.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 6.5e-13 77.4 90 44.4
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 8.5e-13 77.0 94 45.7
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 8.5e-13 77.0 94 45.7
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 8.5e-13 77.0 88 46.6
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.4e-12 76.3 97 42.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.4e-12 76.3 82 46.3
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.9e-12 75.9 94 42.6
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.9e-12 75.9 85 43.5
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-12 75.9 94 47.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 88 46.6
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 83 45.8
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.2e-12 75.1 89 42.7
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.2e-12 75.1 81 45.7
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.2e-12 74.7 97 45.4
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 4.2e-12 74.7 83 47.0
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.2e-12 74.7 94 41.5
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 5.5e-12 74.3 95 43.2
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.5e-12 74.3 80 46.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.5e-12 74.3 84 46.4
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.5e-12 74.3 84 46.4
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.5e-12 74.3 88 48.9
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 5.5e-12 74.3 91 46.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 5.5e-12 74.3 81 49.4
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 5.5e-12 74.3 106 43.4
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 7.2e-12 73.9 86 44.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 9.4e-12 73.6 85 45.9
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 9.4e-12 73.6 94 44.7
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 9.4e-12 73.6 54 59.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.2e-11 73.2 84 50.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-11 73.2 83 48.2
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 55 63.6
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-11 73.2 97 44.3
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.2e-11 73.2 83 47.0
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-11 72.8 83 47.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-11 72.8 82 47.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.1e-11 72.4 91 45.1
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 54 59.3
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 94 36.2
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.6e-11 71.6 91 41.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.6e-11 71.6 83 48.2
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.6e-11 71.2 91 44.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.6e-11 71.2 76 46.1
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.1e-11 70.9 81 44.4
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.1e-11 70.9 83 44.6
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-11 70.9 85 48.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-11 70.9 91 39.6
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.1e-11 70.9 80 46.2
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.9e-11 70.5 81 42.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.9e-11 70.5 83 44.6
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 7.9e-11 70.5 88 48.9
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.9e-11 70.5 59 52.5
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.0e-10 70.1 81 40.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-10 70.1 50 60.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-10 70.1 50 60.0
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.4e-10 69.7 82 43.9
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-10 69.7 97 41.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 97 41.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 91 44.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.4e-10 69.7 83 48.2
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-10 69.7 83 45.8
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-10 69.7 91 44.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-10 69.3 83 47.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-10 69.3 83 47.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-10 69.3 83 47.0
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-10 69.3 93 38.7
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-10 68.9 91 39.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-10 68.9 59 55.9
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-10 68.9 51 58.8
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 3.0e-10 68.6 87 44.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 3.0e-10 68.6 54 53.7
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.9e-10 68.2 84 48.8
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 5.1e-10 67.8 91 44.0
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 5.1e-10 67.8 94 42.6
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.7e-10 67.4 55 58.2
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 6.7e-10 67.4 87 40.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 8.8e-10 67.0 51 58.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.1e-09 66.6 49 55.1
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-09 65.9 86 41.9
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.0e-09 65.9 83 43.4
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 2.5e-09 65.5 90 40.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 3.3e-09 65.1 91 42.9
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 3.3e-09 65.1 100 40.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.3e-09 65.1 53 50.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-09 64.7 49 57.1
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 4.3e-09 64.7 83 43.4
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 5.7e-09 64.3 94 40.4
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 5.7e-09 64.3 85 42.4
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 7.4e-09 63.9 93 41.9
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 93 38.7
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-08 63.2 43 60.5
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.2e-08 62.4 83 42.2
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-08 62.0 46 58.7
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 3.7e-08 61.6 89 39.3
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 6.3e-08 60.8 81 40.7
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-08 60.8 93 40.9
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-08 60.8 93 40.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 8.2e-08 60.5 92 38.0
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 81 35.8
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 81 38.3
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-07 59.7 50 44.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-07 59.3 82 43.9
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.4e-07 58.9 81 35.8
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-07 57.8 81 43.2
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 9.1e-07 57.0 90 36.7
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-06 56.6 81 37.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 5.9e-06 54.3 49 46.9
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.7e-06 53.9 72 38.9


User provided reference genes

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