Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.1e-178 629.8 313 100.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 3.7e-121 438.7 309 69.9
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.5e-118 427.9 312 67.6
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 7.2e-117 424.5 311 65.0
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.0e-115 419.1 311 65.6
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.4e-114 415.2 311 65.0
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.7e-113 413.3 310 65.5
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.2e-113 412.9 310 63.5
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.8e-113 412.5 311 64.6
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 6.3e-113 411.4 309 65.0
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 8.2e-113 411.0 309 64.7
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.4e-112 410.2 311 65.6
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.8e-112 409.8 310 63.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.8e-112 409.8 311 63.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.8e-112 409.8 311 62.7
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.8e-112 409.8 311 63.3
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 2.4e-112 409.5 310 64.2
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.2e-111 407.1 311 62.1
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 2.0e-111 406.4 311 63.7
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.0e-111 406.4 312 64.4
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 5.9e-111 404.8 312 63.1
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 7.7e-111 404.4 311 63.7
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.3e-110 403.7 310 63.5
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.3e-110 403.7 306 64.7
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.7e-110 403.3 310 63.9
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.7e-110 403.3 311 63.7
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.8e-110 402.1 311 62.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 3.8e-110 402.1 312 62.2
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 6.5e-110 401.4 311 61.7
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.5e-110 401.0 311 62.1
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 8.5e-110 401.0 311 62.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-109 400.2 311 63.3
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.9e-109 399.8 310 63.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.9e-109 399.8 311 62.7
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.9e-109 399.8 306 63.4
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.9e-109 399.8 312 63.5
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.9e-109 399.8 312 62.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 2.5e-109 399.4 309 61.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 2.5e-109 399.4 312 61.9
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.2e-109 398.7 311 62.7
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 5.5e-109 398.3 311 61.1
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 7.2e-109 397.9 306 63.4
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 9.4e-109 397.5 311 61.1
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 9.4e-109 397.5 311 61.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.2e-108 397.1 312 62.5
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.6e-108 396.7 309 63.1
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 2.1e-108 396.4 306 61.8
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.1e-108 396.4 294 65.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.7e-108 396.0 311 63.0
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 3.6e-108 395.6 310 62.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 6.1e-108 394.8 311 62.1
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 6.1e-108 394.8 311 62.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.0e-107 394.0 311 61.1
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.8e-107 393.3 309 61.5
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.3e-107 392.9 314 61.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 3.0e-107 392.5 306 63.4
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 5.2e-107 391.7 314 61.1
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 5.2e-107 391.7 314 61.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 8.8e-107 391.0 300 64.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 8.8e-107 391.0 309 63.1
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.5e-106 390.2 308 63.6
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.0e-106 389.8 310 62.6
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 7.5e-106 387.9 311 61.4
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.3e-105 387.1 310 61.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.2e-105 386.3 311 60.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 4.8e-105 385.2 310 61.0
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-104 383.3 311 59.8
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.1e-104 382.5 311 61.1
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 304 61.8
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 3.8e-102 375.6 354 54.5
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.8e-102 375.6 309 59.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 5.0e-102 375.2 310 58.4
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.6e-100 369.0 310 60.0
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.6e-100 369.0 304 60.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 2.3e-99 366.3 312 58.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 6.8e-99 364.8 312 59.3
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 2.0e-98 363.2 310 56.1
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.3e-97 360.5 313 56.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.1e-96 357.5 311 56.3
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 5.4e-96 355.1 277 62.8
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 9.1e-96 354.4 309 57.3
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.0e-95 353.2 314 56.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-94 350.9 305 59.7
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-94 350.5 305 59.7
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.7e-94 350.1 273 61.5
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.7e-94 350.1 314 55.1
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 8.6e-94 347.8 310 55.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 8.6e-94 347.8 305 59.3
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.9e-93 346.7 312 56.1
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.5e-93 346.3 305 59.3
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-93 345.9 305 59.0
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-93 345.9 304 59.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-93 345.9 304 59.2
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-93 345.9 305 59.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 4.2e-93 345.5 311 55.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.2e-92 344.0 305 58.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.6e-92 342.4 305 58.4
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 4.7e-92 342.0 269 62.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 8.9e-91 337.8 309 54.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.5e-90 337.0 311 52.4
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.7e-89 333.6 311 52.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.7e-89 332.4 311 53.7
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.4e-88 330.5 311 54.0
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.8e-88 330.1 311 58.8
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.1e-88 328.9 304 57.6
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.2e-88 327.8 241 63.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.2e-87 327.4 310 53.2
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.9e-87 325.1 310 52.9
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 8.6e-86 321.2 310 50.0
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-85 320.9 239 63.2
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-85 320.5 311 55.6
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.3e-85 319.3 311 52.4
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 7.3e-85 318.2 315 53.3
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.1e-84 316.6 310 51.0
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.1e-84 316.6 310 51.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 5.2e-83 312.0 311 50.8
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 5.2e-83 312.0 311 50.8
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 6.8e-83 311.6 312 50.6
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 6.8e-83 311.6 354 45.8
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.6e-82 309.7 309 49.8
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 5.8e-82 308.5 311 49.5
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.1e-80 304.3 312 49.4
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 6.0e-79 298.5 315 47.3
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-77 291.6 207 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.0e-75 285.8 308 45.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.5e-74 283.9 325 46.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 6.4e-73 278.5 313 48.6
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 1.6e-71 273.9 183 66.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.5e-69 266.5 223 58.7
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 8.9e-67 258.1 196 59.7
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.9e-65 252.3 261 49.4
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 7.1e-56 221.9 150 64.0
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.1e-48 198.0 354 37.0
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.9e-48 197.2 144 61.1
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 7.8e-47 191.8 171 48.5
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.7e-46 190.7 166 62.0
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 6.4e-41 172.2 206 46.1
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 3.9e-38 162.9 162 56.2
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.8e-36 156.8 251 37.5
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.9e-21 107.5 232 30.6
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.3e-21 106.7 140 45.7
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 4.8e-20 102.8 270 29.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.4e-19 100.5 318 25.2
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 3.1e-19 100.1 235 29.4
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.5e-18 96.3 78 50.0
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.2e-16 89.0 71 57.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 5.1e-14 82.8 52 67.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.3e-12 78.2 104 45.2
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.7e-12 76.6 51 56.9
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 1.1e-11 75.1 90 46.7
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 4.1e-11 73.2 291 25.1
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 5.3e-11 72.8 326 23.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 7.7e-10 68.9 53 62.3
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.9e-09 67.0 260 27.7
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.5e-09 65.9 92 44.6
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.1e-08 65.1 313 25.6
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.5e-08 63.9 215 25.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.5e-08 63.9 158 31.0
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.5e-08 63.9 312 25.0
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 4.2e-08 63.2 317 24.0
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 5.5e-08 62.8 309 24.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 5.5e-08 62.8 215 30.2
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 9.4e-08 62.0 308 23.4
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.6e-07 61.2 296 26.0
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 2.7e-07 60.5 311 23.2
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.6e-07 60.1 310 23.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.7e-07 59.7 310 23.5
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 6.1e-07 59.3 303 23.4
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 6.1e-07 59.3 306 22.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 7.9e-07 58.9 316 24.7
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 7.9e-07 58.9 309 23.9
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.8e-06 57.8 292 23.6
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.8e-06 57.8 310 23.5
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 2.3e-06 57.4 226 28.8
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.0e-06 57.0 308 23.4
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 5.1e-06 56.2 303 23.1
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.7e-06 55.8 45 48.9


User provided reference genes

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