Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.2e-121 439.9 224 100.0
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.7e-70 268.5 211 65.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.4e-69 266.9 191 74.9
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 4.0e-69 265.4 222 60.8
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 5.2e-69 265.0 222 60.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 7.1e-66 254.6 222 60.4
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.0e-64 250.8 224 58.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.3e-64 250.4 222 58.6
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 3.9e-64 248.8 223 58.3
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.6e-64 247.7 222 56.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.5e-63 246.9 224 57.1
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.9e-63 246.5 218 58.3
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.3e-63 245.7 224 57.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-62 243.4 222 55.9
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 2.1e-62 243.0 224 56.7
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.8e-62 242.7 222 57.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.8e-62 242.7 222 57.7
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 6.2e-62 241.5 222 56.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.1e-61 240.7 222 56.3
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.0e-61 238.8 224 56.2
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 5.2e-61 238.4 220 57.3
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 8.9e-61 237.7 223 54.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.2e-60 237.3 223 55.2
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.0e-60 236.5 223 55.2
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 2.0e-60 236.5 222 55.9
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.4e-60 235.7 220 55.5
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 4.4e-60 235.3 222 55.4
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.9e-60 234.2 224 55.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.7e-59 233.4 223 55.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 3.7e-59 232.3 203 58.1
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 8.4e-59 231.1 223 53.4
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 8.4e-59 231.1 218 54.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 8.4e-59 231.1 223 54.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.4e-58 229.6 223 52.5
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.4e-58 229.6 222 54.1
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 7.1e-58 228.0 218 53.2
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.1e-58 228.0 220 52.7
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 9.2e-58 227.6 222 53.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.1e-57 226.5 202 55.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.7e-57 226.1 218 55.0
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 3.5e-57 225.7 225 53.3
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.9e-56 222.2 222 51.4
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.5e-55 219.5 217 52.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 5.6e-55 218.4 222 52.3
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 7.3e-55 218.0 191 57.6
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 9.6e-55 217.6 222 50.9
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.6e-54 216.9 222 51.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 6.2e-54 214.9 220 53.2
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.4e-53 213.8 216 52.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.2e-52 210.7 224 51.3
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 2.6e-52 209.5 224 50.9
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.4e-52 209.1 218 49.1
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 5.8e-52 208.4 219 52.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.7e-51 206.8 226 48.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.2e-51 206.5 221 49.3
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.9e-51 206.1 222 48.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 6.4e-51 204.9 222 47.7
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 6.4e-51 204.9 198 53.5
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-50 203.8 221 49.3
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.4e-50 203.8 222 51.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.9e-50 203.4 224 49.1
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.4e-50 203.0 222 49.5
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 2.4e-50 203.0 222 50.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 4.2e-50 202.2 225 50.2
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 7.1e-50 201.4 202 54.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 9.3e-50 201.1 215 49.3
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 9.3e-50 201.1 218 49.5
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.2e-49 200.7 220 48.2
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.2e-49 200.7 275 45.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.6e-49 200.3 220 48.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 2.7e-49 199.5 219 48.9
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 3.5e-49 199.1 217 48.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.5e-49 199.1 185 55.7
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 4.6e-49 198.7 221 49.3
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 6.0e-49 198.4 225 48.9
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.0e-48 197.6 206 50.5
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.7e-48 196.8 221 48.0
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.3e-48 196.4 225 48.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.0e-48 196.1 221 49.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 8.7e-48 194.5 218 48.6
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 8.7e-48 194.5 218 48.6
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.3e-47 191.4 215 49.3
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.6e-46 190.3 215 47.9
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 8.1e-46 188.0 222 48.2
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 5.3e-45 185.3 191 51.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 5.8e-44 181.8 212 47.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.2e-43 179.9 226 45.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 8.4e-43 177.9 197 50.3
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.4e-42 177.2 227 44.5
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 2.4e-42 176.4 224 46.0
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.2e-42 175.6 196 48.5
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 1.2e-41 174.1 230 45.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.6e-41 173.7 209 45.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.6e-41 172.2 216 44.4
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 6.0e-41 171.8 224 45.5
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 6.0e-41 171.8 203 48.3
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 7.9e-41 171.4 265 40.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 8.7e-40 167.9 198 48.5
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 4.0e-37 159.1 209 43.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 9.0e-37 157.9 215 43.7
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.2e-36 157.5 222 41.4
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.5e-36 157.1 218 42.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 2.2e-35 153.3 171 48.0
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.4e-34 149.8 197 44.2
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.0e-32 144.4 136 54.4
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.0e-32 144.4 225 39.1
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.4e-26 124.0 205 38.5
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 7.1e-26 121.7 114 56.1
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 6.3e-22 108.6 219 32.9
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.5e-19 98.2 116 44.8
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-18 97.4 191 33.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 4.6e-17 92.4 229 31.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.1e-16 89.0 128 42.2
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.7e-16 88.6 177 32.8
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.7e-16 88.6 177 32.8
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.5e-15 87.4 145 39.3
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 4.3e-15 85.9 211 28.0
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 5.7e-15 85.5 128 45.3
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.8e-13 80.5 100 44.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 2.4e-13 80.1 127 40.9
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 9.0e-13 78.2 145 37.9
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.2e-12 77.8 145 33.1
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 5.9e-12 75.5 127 39.4
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.7e-11 73.9 64 57.8
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 7.2e-10 68.6 78 52.6
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.7e-09 66.6 97 36.1
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.1e-07 61.2 68 48.5
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.1e-07 61.2 68 48.5
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.6e-07 60.1 147 35.4
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 2.6e-07 60.1 162 29.0
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.3e-07 59.7 65 52.3
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 3.3e-07 59.7 105 42.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 9.7e-07 58.2 46 58.7
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.3e-06 55.5 60 46.7
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.3e-06 55.5 60 46.7
SEGI_14513 Sequoiadendron giganteum HOM05D006791 ORTHO05D008221 8.2e-06 55.1 89 38.2


User provided reference genes

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