Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 2.1e-160 568.9 272 100.0
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.1e-72 276.6 149 85.9
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.1e-72 276.6 149 85.9
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.1e-72 276.6 203 67.5
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 2.7e-72 276.2 140 91.4
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.7e-72 276.2 149 85.2
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 4.7e-72 275.4 207 68.6
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.0e-71 274.2 165 78.8
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 3.0e-71 272.7 146 87.7
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 4.0e-71 272.3 160 81.9
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.2e-71 271.9 204 66.7
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 8.8e-71 271.2 179 74.9
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 1.2e-70 270.8 146 87.0
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 2.0e-70 270.0 228 61.0
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 3.4e-70 269.2 145 86.2
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 3.4e-70 269.2 146 86.3
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 7.5e-70 268.1 146 85.6
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 7.5e-70 268.1 165 77.6
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 7.5e-70 268.1 146 86.3
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 9.8e-70 267.7 165 77.0
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 2.2e-69 266.5 216 64.4
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 2.8e-69 266.2 142 87.3
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 3.7e-69 265.8 204 64.7
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 6.3e-69 265.0 251 57.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.4e-68 263.8 140 85.7
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.4e-68 263.8 221 62.9
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.4e-68 263.8 136 89.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.4e-68 263.8 208 66.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.8e-68 263.5 140 87.1
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.4e-68 263.1 152 81.6
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 2.4e-68 263.1 202 67.3
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 7.0e-68 261.5 146 82.9
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 7.0e-68 261.5 138 87.0
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.0e-68 261.5 141 85.1
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 9.2e-68 261.2 178 71.9
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.2e-67 260.8 231 59.3
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.2e-67 260.8 196 64.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 1.2e-67 260.8 165 75.2
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.2e-67 260.8 138 86.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.2e-67 260.8 144 86.8
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.6e-67 260.4 136 88.2
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 2.0e-67 260.0 208 62.5
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 2.0e-67 260.0 151 80.8
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 2.7e-67 259.6 146 82.9
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 2.7e-67 259.6 145 82.8
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 2.7e-67 259.6 161 75.8
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.7e-67 259.6 136 89.7
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.7e-67 259.6 138 85.5
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 3.5e-67 259.2 142 83.1
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 3.5e-67 259.2 136 87.5
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 4.5e-67 258.8 202 66.8
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.9e-67 258.5 164 73.8
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 7.7e-67 258.1 136 86.8
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-66 257.7 136 88.2
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.0e-66 257.7 140 83.6
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.0e-66 257.7 136 87.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 1.7e-66 256.9 150 80.0
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 1.7e-66 256.9 199 62.8
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 2.3e-66 256.5 147 79.6
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.3e-66 256.5 147 79.6
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 2.9e-66 256.1 170 74.1
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 2.9e-66 256.1 214 61.7
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 3.8e-66 255.8 175 69.1
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.8e-66 255.8 147 79.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 5.0e-66 255.4 144 83.3
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.0e-66 255.4 147 79.6
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 5.0e-66 255.4 136 86.0
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 6.6e-66 255.0 165 73.9
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.6e-66 255.0 148 80.4
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 6.6e-66 255.0 144 81.9
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 8.6e-66 254.6 231 58.9
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 8.6e-66 254.6 136 84.6
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.6e-66 254.6 136 86.0
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.5e-65 253.8 136 86.8
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 2.5e-65 253.1 136 83.8
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 2.5e-65 253.1 136 83.8
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.5e-65 253.1 136 83.8
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 2.5e-65 253.1 136 83.8
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 3.3e-65 252.7 136 86.0
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 3.3e-65 252.7 158 76.6
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 7.3e-65 251.5 217 60.4
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 9.5e-65 251.1 138 85.5
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 9.5e-65 251.1 202 64.4
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-64 250.8 136 83.8
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 1.6e-64 250.4 170 70.0
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.8e-64 249.6 149 79.9
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.8e-64 249.6 138 82.6
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 3.6e-64 249.2 152 75.0
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 6.1e-64 248.4 152 77.0
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 6.1e-64 248.4 152 77.0
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 8.0e-64 248.1 136 83.1
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.4e-63 247.3 136 81.6
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.8e-63 246.9 141 80.1
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 8.9e-63 244.6 217 58.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 2.0e-62 243.4 137 81.0
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 2.0e-62 243.4 137 81.0
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 2.6e-62 243.0 141 78.7
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.6e-62 243.0 136 81.6
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 3.4e-62 242.7 154 75.3
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.4e-62 242.7 146 79.5
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 9.8e-62 241.1 146 78.1
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 3.7e-61 239.2 145 75.9
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.9e-61 238.8 166 69.3
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.9e-61 238.8 136 79.4
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.4e-60 237.3 148 78.4
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.4e-60 237.3 157 69.4
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.4e-60 236.5 161 71.4
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 5.4e-60 235.3 126 84.9
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.7e-59 233.0 136 77.9
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 3.5e-59 232.6 139 79.9
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 4.6e-59 232.3 126 83.3
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 7.8e-59 231.5 126 83.3
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.5e-57 227.3 200 61.0
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.5e-57 227.3 136 76.5
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 4.3e-57 225.7 145 69.0
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-56 224.2 136 75.7
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-54 217.6 136 71.3
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.0e-54 216.9 136 70.6
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.0e-52 208.4 140 65.7
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 2.7e-51 206.5 153 67.3
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 8.9e-47 191.4 140 60.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.1e-44 184.5 139 59.7
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 8.6e-42 174.9 94 79.8
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 5.6e-41 172.2 94 80.9
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.3e-41 171.8 95 78.9
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 8.9e-39 164.9 137 57.7
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 5.8e-38 162.2 84 84.5
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 2.1e-35 153.7 160 51.9
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 9.6e-33 144.8 117 56.4
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 3.6e-32 142.9 76 78.9
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 5.2e-31 139.0 140 47.1
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.6e-24 117.5 82 59.8
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 6.9e-23 112.1 76 64.5
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.5e-22 110.9 55 85.5
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 5.4e-20 102.4 58 84.5
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 4.6e-19 99.4 84 58.3
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 2.3e-18 97.1 64 75.0
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.6e-16 89.7 90 56.7
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 3.1e-15 86.7 102 51.0
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 3.4e-14 83.2 44 88.6
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.5e-14 82.8 59 71.2
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.8e-14 82.4 43 93.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 7.9e-11 72.0 43 76.7
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 3.4e-06 56.6 37 67.6


User provided reference genes

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