Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 4.7e-163 577.8 288 100.0
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.0e-102 374.8 221 81.0
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 6.6e-101 371.3 314 63.4
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 6.6e-101 371.3 302 63.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.5e-100 370.2 306 63.1
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.3e-99 367.1 222 78.8
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 3.6e-99 365.5 221 79.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 3.6e-99 365.5 316 63.0
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.2e-99 364.8 291 67.4
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.4e-98 363.6 225 76.4
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 3.1e-98 362.5 312 60.6
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 5.3e-98 361.7 286 64.3
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 5.3e-98 361.7 249 70.7
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.3e-98 361.7 215 80.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.9e-98 361.3 290 66.9
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 9.0e-98 360.9 228 75.4
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 9.0e-98 360.9 223 77.6
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.2e-97 360.5 300 65.3
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.2e-97 360.5 291 66.7
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.2e-97 360.5 289 66.4
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.0e-97 359.8 291 66.7
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 2.0e-97 359.8 221 77.4
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.0e-97 359.8 308 63.3
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.6e-97 359.4 229 75.5
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 3.4e-97 359.0 303 64.4
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 3.4e-97 359.0 309 63.4
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 9.9e-97 357.5 301 63.5
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 9.9e-97 357.5 221 76.9
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.7e-96 356.7 223 76.7
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.7e-96 356.7 304 62.2
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 3.8e-96 355.5 219 77.6
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.4e-96 354.8 308 61.7
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 8.4e-96 354.4 226 75.2
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 8.4e-96 354.4 301 62.8
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.1e-95 354.0 307 61.9
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.4e-95 353.6 298 61.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 2.4e-95 352.8 229 74.7
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 4.2e-95 352.1 311 62.1
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 5.5e-95 351.7 296 61.5
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 7.1e-95 351.3 251 68.9
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 9.3e-95 350.9 221 76.0
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.6e-94 350.1 299 62.2
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.6e-94 350.1 220 76.4
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 2.1e-94 349.7 303 61.4
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 2.7e-94 349.4 297 62.3
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 2.7e-94 349.4 312 60.3
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.5e-94 349.0 264 66.7
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.6e-94 348.6 305 60.7
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.6e-94 348.6 221 74.2
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 6.0e-94 348.2 302 61.6
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 6.0e-94 348.2 300 61.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 6.0e-94 348.2 301 61.1
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 1.3e-93 347.1 306 60.8
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 1.8e-93 346.7 246 69.5
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 1.8e-93 346.7 290 62.8
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.8e-93 346.7 223 74.0
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.8e-93 346.7 301 60.5
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 2.3e-93 346.3 304 61.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 2.3e-93 346.3 295 62.7
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 2.3e-93 346.3 295 62.7
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.3e-93 346.3 309 60.5
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 3.0e-93 345.9 303 60.4
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 5.1e-93 345.1 295 62.4
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 5.1e-93 345.1 302 61.3
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 8.7e-93 344.4 305 59.3
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.1e-92 344.0 307 61.6
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.9e-92 343.2 295 62.7
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.9e-92 343.2 290 63.1
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.9e-92 343.2 312 59.9
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.5e-92 342.8 298 60.1
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 7.4e-92 341.3 303 61.4
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.3e-91 340.5 290 64.5
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 2.8e-91 339.3 301 59.5
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 3.7e-91 339.0 221 75.6
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 4.8e-91 338.6 305 59.0
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 8.1e-91 337.8 240 67.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.1e-90 337.4 242 68.2
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.1e-90 337.4 228 70.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.1e-90 337.4 301 59.5
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.1e-90 337.4 222 71.2
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.8e-90 336.7 221 75.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.8e-90 336.7 298 60.7
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 3.1e-90 335.9 216 73.6
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 6.9e-90 334.7 204 78.4
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.6e-89 332.8 321 55.8
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.0e-88 330.9 340 53.5
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.7e-88 330.1 301 61.1
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 1.7e-88 330.1 311 57.6
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.9e-88 329.3 301 61.1
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.9e-87 326.6 217 71.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 2.5e-87 326.2 219 69.4
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 5.5e-87 325.1 219 68.9
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.6e-86 323.6 217 72.4
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 4.6e-86 322.0 211 73.0
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.3e-85 320.5 237 65.8
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.3e-85 319.7 214 70.6
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 2.3e-85 319.7 228 70.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 3.9e-85 318.9 316 54.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 3.9e-85 318.9 227 66.1
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 8.7e-85 317.8 300 57.7
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 8.7e-85 317.8 209 71.8
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.5e-84 316.2 248 63.7
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 9.6e-84 314.3 226 65.0
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.3e-83 313.9 297 57.6
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.3e-83 313.9 198 73.2
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.7e-83 312.4 278 60.8
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 4.1e-82 308.9 201 73.6
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 5.5e-79 298.5 289 58.1
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 1.3e-77 293.9 295 56.6
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 8.2e-75 284.6 255 56.1
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 7.2e-71 271.6 185 71.9
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.0e-69 267.7 237 56.5
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 2.0e-68 263.5 254 57.9
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.8e-67 259.6 223 53.4
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 3.8e-64 249.2 230 54.3
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.5e-63 246.5 242 56.6
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 6.1e-62 241.9 201 59.2
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 2.3e-61 240.0 185 64.9
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 9.1e-58 228.0 190 63.2
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.5e-47 193.4 187 54.5
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 8.3e-43 178.3 109 75.2
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 2.2e-40 170.2 144 58.3
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 5.0e-40 169.1 208 42.8
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.6e-38 164.1 155 56.1
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 9.2e-34 148.3 83 78.3
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-33 147.9 83 79.5
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 6.6e-32 142.1 208 38.5
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 7.3e-31 138.7 125 56.8
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 3.6e-30 136.3 128 56.2
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 4.4e-28 129.4 87 69.0
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 3.7e-27 126.3 68 80.9
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.0e-25 120.6 150 37.3
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 3.9e-24 116.3 199 31.2
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 9.2e-18 95.1 57 75.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.0e-17 94.0 135 45.9
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.7e-16 90.9 87 56.3
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.5e-12 77.8 134 41.0
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 3.7e-11 73.2 83 47.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.4e-10 69.3 60 61.7
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.6e-09 66.2 99 43.4
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.0e-08 65.1 31 87.1
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 1.5e-07 61.2 35 80.0
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 1.5e-07 61.2 46 63.0
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 9.5e-07 58.5 28 85.7
BolC9t57447H Brassica oleracea HOM05D042334 ORTHO05D027294 1.6e-06 57.8 73 45.2


User provided reference genes

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