Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 4.9e-92 341.3 192 100.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.9e-28 129.4 175 42.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.8e-28 129.0 118 56.8
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.5e-28 128.3 132 53.0
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 8.5e-28 127.9 125 54.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.1e-27 127.5 155 47.7
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 3.2e-27 125.9 149 48.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.2e-27 125.6 105 60.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 5.5e-27 125.2 119 55.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 9.4e-27 124.4 157 47.1
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.1e-26 123.2 134 47.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.6e-26 122.5 119 53.8
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 4.7e-26 122.1 118 52.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 8.0e-26 121.3 119 54.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.4e-25 120.6 116 54.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.3e-25 119.8 154 44.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 4.0e-25 119.0 143 49.0
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.0e-25 119.0 171 45.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.2e-25 118.6 143 48.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.2e-25 118.6 114 54.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.2e-25 118.6 114 54.4
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 8.8e-25 117.9 166 46.4
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 8.8e-25 117.9 166 46.4
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.2e-24 117.5 167 43.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-24 117.1 135 50.4
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.0e-24 116.7 154 46.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 4.4e-24 115.5 163 45.4
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.7e-24 115.2 137 48.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 5.7e-24 115.2 149 47.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.7e-24 115.2 115 54.8
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 7.5e-24 114.8 115 53.0
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.5e-24 114.8 147 44.9
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 7.5e-24 114.8 147 46.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 9.8e-24 114.4 122 46.7
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.2e-23 113.2 137 46.0
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.8e-23 112.8 103 57.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.7e-23 112.5 103 55.3
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 6.3e-23 111.7 109 50.5
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 6.3e-23 111.7 137 48.2
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 6.3e-23 111.7 149 43.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.1e-22 110.9 137 46.0
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.4e-22 110.5 142 47.9
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.4e-22 110.5 166 43.4
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.4e-22 110.5 119 51.3
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.1e-22 109.4 147 46.3
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.1e-22 109.0 163 43.6
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 5.4e-22 108.6 114 48.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.0e-22 108.2 143 46.2
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 9.1e-22 107.8 156 43.6
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.2e-21 107.5 154 41.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.2e-21 107.5 167 42.5
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.2e-21 107.5 91 58.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.6e-21 107.1 166 42.2
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.6e-21 107.1 155 43.2
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.6e-21 107.1 116 51.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.7e-21 106.3 195 39.5
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 5.9e-21 105.1 114 46.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 5.9e-21 105.1 114 45.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.3e-20 104.0 111 55.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-20 103.6 154 39.6
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-20 103.6 111 45.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-20 103.6 111 45.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.7e-20 103.6 154 39.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 5.0e-20 102.1 114 44.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 5.0e-20 102.1 114 44.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 5.0e-20 102.1 155 42.6
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.6e-20 101.3 135 47.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.1e-19 100.9 157 43.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.9e-19 100.1 109 47.7
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.5e-19 99.8 91 56.0
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 4.2e-19 99.0 109 46.8
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 5.5e-19 98.6 92 54.3
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 7.2e-19 98.2 127 43.3
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.2e-19 98.2 113 49.6
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 7.2e-19 98.2 145 42.1
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.5e-19 97.8 84 58.3
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.6e-18 97.1 156 39.1
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.6e-18 97.1 151 43.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-18 97.1 85 57.6
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.1e-18 96.7 101 51.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.1e-18 96.7 95 52.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.8e-18 96.3 84 57.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-18 96.3 118 46.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 4.7e-18 95.5 90 55.6
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.7e-18 95.5 113 47.8
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 6.1e-18 95.1 84 56.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 6.1e-18 95.1 97 49.5
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 6.1e-18 95.1 84 54.8
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.1e-18 95.1 151 40.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 6.1e-18 95.1 96 46.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-17 92.4 135 42.2
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.0e-17 92.4 105 46.7
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 5.2e-17 92.0 124 43.5
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 5.2e-17 92.0 97 50.5
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 8.9e-17 91.3 86 51.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.2e-16 90.9 93 49.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.6e-16 89.7 182 36.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 5.7e-16 88.6 146 40.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 5.7e-16 88.6 93 50.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 9.8e-16 87.8 114 43.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.7e-15 85.9 91 48.4
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 6.3e-15 85.1 73 60.3
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 8.3e-15 84.7 116 40.5
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.1e-14 84.3 133 38.3
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 5.4e-14 82.0 79 57.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.0e-13 80.1 73 56.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 5.9e-13 78.6 72 54.2
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.7e-12 77.0 83 49.4
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.8e-12 75.9 73 54.8
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.6e-12 74.7 73 54.8
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 8.6e-12 74.7 90 46.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.5e-11 73.2 62 59.7
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.5e-11 73.2 138 38.4
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.3e-11 72.4 136 36.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 5.6e-11 72.0 161 32.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.3e-11 71.6 59 62.7
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 9.5e-11 71.2 144 35.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.6e-10 69.3 155 34.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 6.1e-10 68.6 101 40.6
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 6.8e-09 65.1 77 46.8
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 8.9e-09 64.7 94 40.4
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-08 64.3 55 61.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-08 63.5 82 45.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.4e-08 62.8 63 50.8
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.4e-08 62.8 158 32.9
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 5.8e-08 62.0 59 47.5
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 5.8e-08 62.0 158 34.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.3e-07 60.8 79 48.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.3e-07 60.8 159 31.4
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.3e-07 60.8 153 31.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.7e-07 60.5 148 35.8
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.2e-07 60.1 145 31.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.2e-07 60.1 58 50.0
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.9e-07 59.7 92 38.0
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.7e-07 59.3 90 41.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.7e-07 59.3 90 41.1
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 4.9e-07 58.9 60 50.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 6.4e-07 58.5 59 54.2
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 8.3e-07 58.2 97 32.0
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 8.3e-07 58.2 170 34.7
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-06 57.8 91 39.6
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-06 57.8 76 38.2
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 4.1e-06 55.8 93 37.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 5.4e-06 55.5 101 35.6
PGSC0003DMG401016272 Solanum tuberosum HOM05D002369 ORTHO05D002435 7.0e-06 55.1 72 43.1


User provided reference genes

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