Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.6e-120 434.5 207 100.0
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 7.9e-112 407.1 194 100.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.5e-86 322.4 185 78.4
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.5e-86 322.4 185 78.4
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 5.3e-84 314.7 185 76.8
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.3e-82 310.1 185 74.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.2e-82 309.3 189 73.0
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.9e-82 308.9 185 74.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.8e-82 308.5 184 75.5
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 8.5e-82 307.4 185 75.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.1e-81 307.0 184 76.1
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.1e-81 307.0 184 76.1
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.5e-81 305.8 206 68.4
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 4.2e-81 305.1 184 75.5
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.5e-81 304.7 185 74.6
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 7.2e-81 304.3 187 73.3
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.6e-80 303.1 185 73.0
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.1e-80 302.8 184 75.0
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 7.9e-80 300.8 183 74.9
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.4e-79 300.1 186 73.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.4e-79 300.1 186 73.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.3e-79 299.3 184 73.4
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.0e-78 296.2 176 75.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 2.0e-78 296.2 184 73.4
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 2.0e-78 296.2 185 70.8
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.0e-78 296.2 185 70.8
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.0e-78 296.2 179 73.7
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.0e-78 296.2 175 77.1
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.6e-78 295.8 186 71.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.3e-78 295.4 182 71.4
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.3e-78 295.4 182 71.4
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.3e-78 295.4 184 73.4
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.7e-78 294.7 186 72.6
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.7e-78 294.7 186 72.6
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.4e-78 294.3 215 64.7
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.2e-77 292.7 200 67.5
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.2e-77 292.7 199 68.8
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.2e-77 292.7 187 73.3
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.7e-77 292.0 184 71.7
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.7e-77 292.0 168 78.0
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.7e-77 292.0 179 74.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 4.8e-77 291.6 178 71.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.8e-77 291.6 192 69.8
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.4e-76 290.0 184 71.7
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.4e-76 290.0 186 69.4
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.8e-76 289.7 186 69.4
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.8e-76 289.7 180 72.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 3.1e-76 288.9 179 73.2
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.1e-76 288.9 186 69.9
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 4.1e-76 288.5 186 69.4
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 4.1e-76 288.5 189 68.8
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-76 288.1 183 71.6
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-76 288.1 183 71.6
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.1e-76 287.3 183 71.6
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-75 287.0 183 71.0
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.2e-75 287.0 179 73.7
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.5e-75 286.6 186 69.4
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.5e-75 286.6 182 71.4
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 2.0e-75 286.2 189 68.8
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.0e-75 286.2 181 71.8
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.6e-75 285.8 195 69.7
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.6e-75 285.8 189 69.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 3.4e-75 285.4 183 70.5
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.4e-75 285.4 183 71.0
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.4e-75 285.4 189 68.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 3.4e-75 285.4 181 70.2
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.5e-75 285.0 183 71.0
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 4.5e-75 285.0 187 68.4
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 5.9e-75 284.6 184 70.7
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-75 284.6 184 70.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.9e-75 284.6 189 68.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 7.7e-75 284.3 182 70.9
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.3e-74 283.5 184 69.6
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.7e-74 283.1 184 70.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.7e-74 283.1 181 71.3
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.0e-74 281.6 181 70.7
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.0e-74 281.6 181 70.7
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 8.5e-74 280.8 184 69.6
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 8.5e-74 280.8 180 69.4
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.1e-73 280.4 185 67.6
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.9e-73 279.6 177 70.1
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.9e-73 279.6 180 68.9
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 2.5e-73 279.3 184 69.6
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.2e-73 278.9 178 71.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 4.2e-73 278.5 180 68.9
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.2e-73 278.5 180 68.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 5.5e-73 278.1 184 67.9
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 7.2e-73 277.7 180 68.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 7.2e-73 277.7 191 64.4
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 2.1e-72 276.2 191 64.9
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.1e-72 274.6 210 61.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 4.8e-69 265.0 154 74.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.4e-68 263.5 191 65.4
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.8e-68 263.1 164 73.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.4e-68 262.7 231 55.4
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.1e-68 262.3 231 55.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-67 260.4 162 73.5
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.6e-67 260.0 186 63.4
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.7e-66 256.5 158 72.8
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 2.9e-66 255.8 180 63.3
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.5e-66 254.6 180 63.9
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.9e-65 253.1 175 65.7
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.9e-65 253.1 175 65.7
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 9.4e-65 250.8 185 61.6
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 9.4e-65 250.8 154 72.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.2e-64 250.4 162 70.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.2e-64 250.4 147 76.2
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 3.6e-64 248.8 147 76.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.0e-63 245.4 151 70.9
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.2e-63 245.0 282 47.9
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 3.7e-61 238.8 155 69.7
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.4e-60 236.9 187 61.5
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.8e-60 236.5 144 75.7
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 4.1e-60 235.3 209 54.5
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.7e-59 232.6 186 60.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.2e-58 229.6 184 58.7
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.5e-57 226.9 176 63.6
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 7.2e-57 224.6 181 59.7
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 3.7e-53 212.2 139 66.9
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.1e-52 210.7 186 50.5
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 4.1e-52 208.8 143 64.3
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.2e-51 207.2 164 57.3
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.7e-51 206.1 194 57.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-46 189.5 118 72.0
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.4e-44 183.7 206 47.1
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.5e-43 179.1 177 52.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.0e-42 175.3 174 43.1
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.0e-42 175.3 174 43.1
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.3e-41 172.2 202 40.6
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.3e-39 166.4 182 53.3
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.0e-39 165.6 205 38.5
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 3.2e-36 156.0 121 57.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 9.2e-36 154.5 91 74.7
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.2e-35 154.1 170 40.6
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.2e-35 154.1 157 47.8
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.3e-33 145.6 181 35.4
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.3e-33 144.8 88 73.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-32 143.3 141 51.8
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 8.0e-32 141.4 93 66.7
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-29 134.0 147 48.3
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.9e-29 132.9 142 40.1
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.5e-25 119.8 87 60.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.2e-11 74.3 44 77.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.2e-11 74.3 46 67.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.3e-07 58.9 43 62.8


User provided reference genes

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