Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 2297.3 1208 100.0
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1823.5 1248 82.0
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 1128 67.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1385.9 1253 62.3
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1365.1 1244 63.3
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1364.7 1251 61.4
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1356.7 1247 61.5
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1354.0 1253 61.3
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1254 61.4
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1237 61.3
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1352.8 1257 61.8
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1352.4 1250 60.5
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1346.6 1272 61.2
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1344.3 1251 60.7
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1338.9 1270 59.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1338.6 1226 61.1
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1324.3 1253 60.2
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1324.3 1253 60.2
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1319.3 1189 61.8
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1316.2 1246 59.6
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1315.8 1250 58.9
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1312.7 1246 59.6
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1310.8 1235 59.4
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1309.7 1247 58.9
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1309.3 1248 59.5
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1306.2 1278 57.4
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1305.4 1255 58.1
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1304.7 1243 59.2
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1304.7 1232 59.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1300.4 1250 59.4
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1297.7 1262 58.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1293.9 1247 59.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1292.7 1252 58.5
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1289.6 1261 57.4
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1287.7 1270 58.2
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1286.6 1133 62.5
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1283.5 1247 59.3
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1281.5 1250 57.8
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1281.5 1248 57.8
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1278.8 1249 58.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1277.7 1247 57.7
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1277.3 1157 61.1
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1276.2 1228 58.5
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1273.5 1049 63.8
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1271.9 1237 58.2
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1270.0 1247 57.4
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1269.2 1249 57.6
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1268.8 1251 57.3
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1268.4 1252 57.2
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1265.4 1253 57.4
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1261.1 1049 63.4
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1261.1 1049 63.4
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1260.4 1288 55.9
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1260.0 1049 63.3
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1255.7 1225 59.5
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1254.6 1253 56.7
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1254.2 1265 57.6
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1253.0 1048 63.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1246.5 1256 56.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1246.5 1252 56.5
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1245.7 1207 59.3
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1244.6 1221 59.0
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1243.8 1253 56.7
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1243.4 1254 59.2
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1241.5 1114 59.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1241.1 1135 58.4
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1240.3 1251 56.6
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1236.9 1133 58.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1236.5 1134 58.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1235.3 1252 57.3
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1230.3 1217 57.0
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1228.0 1276 55.6
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1226.5 1167 57.8
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1222.6 1245 56.1
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1222.2 1049 62.4
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1220.3 1251 56.2
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1218.0 1246 56.2
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1216.8 1134 57.8
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1216.8 1134 57.8
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1215.3 1134 57.8
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1215.3 1134 57.8
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1208.7 1228 58.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1200.7 1256 55.7
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1191.4 1229 56.6
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1191.4 1352 52.4
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1187.2 1099 57.9
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1184.5 1049 60.6
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1184.1 1276 54.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1180.6 1225 54.7
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1179.5 1241 55.3
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1175.2 1110 56.6
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1168.7 1186 58.7
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1150.2 1357 50.8
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1149.0 1226 53.3
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1145.2 1076 58.6
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1114.4 1074 56.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1110.9 1255 55.2
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 5.1e-304 1048.1 1060 53.5
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 4.8e-302 1041.6 1243 49.3
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 5.9e-300 1034.6 1070 51.7
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 8.8e-288 994.2 1230 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 2.9e-283 979.2 1051 50.1
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.3e-278 963.8 846 61.7
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 2.8e-278 962.6 848 61.8
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 7.1e-237 825.1 842 55.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 2.2e-230 803.5 922 47.6
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 4.1e-229 799.3 593 69.3
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.5e-223 780.8 775 54.5
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 6.0e-220 768.8 812 53.1
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.6e-162 577.4 518 66.0
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.7e-146 523.1 751 43.3
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.5e-135 487.3 429 59.9
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.6e-122 444.5 352 66.5
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 2.3e-118 431.4 284 78.2
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-118 431.4 471 52.7
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.1e-116 424.9 404 65.8
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.3e-105 389.0 374 52.9
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 7.9e-79 300.1 245 62.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.8e-76 291.6 323 52.9
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-69 268.9 223 60.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-69 268.9 250 55.6
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.4e-67 262.7 1102 25.2
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.1e-67 261.5 251 55.0
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 2.2e-65 255.4 1182 24.5
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.0e-58 232.3 172 66.9
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-53 214.2 387 35.7
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.0e-51 207.2 152 67.1
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 6.5e-49 200.7 162 62.3
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-43 183.3 105 86.7
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.4e-43 183.0 217 47.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 9.1e-43 180.3 99 82.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.7e-41 176.0 103 78.6
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 6.5e-41 174.1 264 44.3
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-40 171.8 149 61.1
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-35 156.0 98 74.5
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 3.8e-33 148.3 110 66.4
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.9e-32 146.0 120 60.0
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.5e-32 144.4 119 58.8
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.1e-31 142.5 219 38.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.0e-30 140.2 93 76.3
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-27 130.2 150 50.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-27 128.3 234 37.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.8e-26 124.0 170 43.5
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.6e-25 120.6 89 73.0
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.3e-22 112.5 93 60.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-21 110.2 85 70.6
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.7e-20 106.3 97 64.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.1e-19 101.7 59 79.7
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.1e-19 101.7 104 55.8
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.9e-17 95.1 134 43.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.6e-17 94.4 67 65.7
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.3e-16 92.0 80 58.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.8e-15 89.0 49 83.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 2.8e-15 89.0 47 93.6
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-14 85.9 77 54.5
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 9.8e-13 80.5 280 31.8
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 4.1e-11 75.1 79 50.6
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.5e-10 72.0 75 52.0
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 1.0e-09 70.5 79 48.1
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 8.6e-09 67.4 66 53.0
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.6e-08 64.7 57 63.2
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 2.3e-06 59.3 71 50.7
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 3.1e-06 58.9 146 25.3
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 5.2e-06 58.2 60 48.3
CBR_g50096 Chara braunii HOM05D026299 ORTHO05D028720 6.8e-06 57.8 242 24.0


User provided reference genes

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