Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 0.0e+00 1220.3 735 100.0
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.8e-187 660.2 731 61.3
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.7e-175 619.8 726 55.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.3e-172 610.9 764 55.2
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 8.2e-172 608.2 724 56.2
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.4e-171 606.7 729 60.5
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.7e-169 600.5 734 57.4
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.2e-169 600.1 709 53.9
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 8.5e-169 598.2 746 57.4
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.5e-168 595.5 721 53.4
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.7e-167 593.2 734 56.0
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.7e-167 593.2 734 56.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 4.7e-167 592.4 718 58.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 6.1e-167 592.0 717 54.0
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.0e-166 591.3 737 56.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.8e-166 590.5 756 58.6
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 5.2e-166 589.0 724 55.1
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 8.8e-166 588.2 724 54.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 7.5e-165 585.1 742 58.5
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.8e-164 583.2 753 53.8
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 4.8e-164 582.4 737 55.8
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.4e-163 580.9 741 57.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-163 580.5 736 56.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 4.1e-163 579.3 733 52.8
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 7.0e-163 578.6 730 57.8
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 8.6e-161 571.6 766 55.7
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 7.2e-160 568.5 765 56.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.1e-159 567.0 732 51.4
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.7e-159 565.8 736 54.1
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.0e-158 564.7 568 58.5
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.4e-158 564.3 712 54.6
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 3.0e-158 563.1 711 55.0
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.7e-156 556.2 722 55.4
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 8.3e-156 555.1 756 52.8
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.8e-155 553.9 714 54.6
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.4e-155 553.5 715 55.9
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.9e-152 543.9 756 49.5
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.0e-151 538.5 745 54.5
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.3e-150 537.0 664 56.3
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 6.4e-148 528.9 760 52.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.2e-147 526.6 691 53.4
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.0e-146 523.9 716 53.2
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.0e-145 520.0 733 51.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.5e-144 517.7 738 50.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 6.2e-143 512.3 675 55.9
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.1e-142 511.5 737 54.5
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 6.8e-142 508.8 649 56.4
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 3.4e-141 506.5 721 51.9
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 7.5e-141 505.4 721 55.2
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 6.4e-140 502.3 742 55.0
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.1e-139 501.5 735 51.0
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 7.0e-139 498.8 747 53.4
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.3e-137 494.6 576 53.3
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.7e-137 494.2 732 51.5
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.9e-136 490.7 731 52.7
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 4.3e-136 489.6 739 50.5
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 2.6e-133 480.3 725 52.0
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.4e-133 479.6 731 48.3
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 7.5e-133 478.8 731 50.6
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.2e-132 477.2 749 51.3
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.7e-132 476.5 729 50.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 6.4e-132 475.7 802 45.5
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 6.4e-132 475.7 789 47.0
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.9e-131 474.2 625 52.8
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.4e-131 473.8 729 50.6
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.0e-129 466.8 747 49.3
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 4.3e-128 463.0 734 48.6
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.3e-128 462.2 740 48.8
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.2e-127 461.5 755 50.7
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.1e-127 460.7 748 47.1
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.2e-125 454.9 759 50.6
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.5e-125 454.5 730 51.1
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 5.8e-125 452.6 764 47.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.3e-124 451.4 581 52.5
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 2.4e-123 447.2 747 49.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 1.6e-122 444.5 742 49.3
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 6.2e-119 432.6 719 46.0
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.5e-117 427.9 436 61.0
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 6.4e-116 422.5 667 50.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 7.8e-114 415.6 343 66.8
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.9e-112 411.0 744 48.1
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.5e-112 410.6 727 48.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 9.0e-110 402.1 559 48.8
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.6e-106 389.8 581 47.3
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 4.6e-106 389.8 561 46.3
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 7.9e-106 389.0 764 44.1
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 9.0e-102 375.6 719 48.4
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 2.6e-101 374.0 705 48.7
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 8.4e-100 369.0 736 42.3
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.8e-97 361.3 375 59.7
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 8.7e-97 359.0 645 43.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.8e-95 354.0 574 46.5
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 3.7e-95 353.6 736 45.8
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 3.7e-95 353.6 736 45.7
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.2e-92 344.4 734 44.8
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 9.3e-91 339.0 759 44.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 7.9e-90 335.9 738 43.9
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 3.0e-89 334.0 726 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.7e-88 329.7 757 40.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.4e-88 329.3 724 40.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.8e-87 326.6 407 56.8
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.1e-86 325.5 679 42.4
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.3e-80 303.9 659 38.8
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.8e-79 300.8 721 39.9
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.9e-76 290.8 760 36.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.3e-73 281.2 650 38.5
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 9.1e-70 269.2 593 38.4
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 4.5e-69 266.9 197 68.5
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-67 262.3 537 39.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.9e-65 253.8 352 55.4
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.4e-57 228.8 883 26.7
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.2e-52 211.5 244 48.0
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 8.8e-49 199.5 260 54.2
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 5.7e-48 196.8 301 48.8
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 9.8e-48 196.1 557 30.9
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 8.3e-47 193.0 236 45.8
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-46 191.8 266 50.0
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.1e-43 182.6 258 49.6
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.8e-41 175.3 761 27.9
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.2e-40 172.6 433 37.0
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.9e-35 155.2 611 30.4
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.3e-35 154.5 234 46.6
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 9.5e-35 152.9 450 30.4
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 6.8e-33 146.7 241 40.2
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 9.2e-30 136.3 279 44.4
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 7.5e-24 116.7 91 70.3
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 6.4e-23 113.6 158 48.7
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 5.4e-22 110.5 186 43.0
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 2.1e-21 108.6 186 37.6
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.7e-21 108.2 120 55.0
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.9e-20 104.4 185 49.2
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.1e-20 104.0 105 49.5
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 5.6e-19 100.5 150 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.1e-18 96.7 313 32.3
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.5e-16 92.4 102 48.0
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.8e-16 90.5 74 62.2
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 7.6e-16 90.1 79 53.2
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-15 89.0 67 61.2
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 5.4e-14 84.0 151 39.7
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.3e-12 79.3 81 56.8
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 5.1e-12 77.4 196 32.1
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.1e-10 72.0 71 53.5
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.8e-10 71.6 71 53.5
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.4e-09 69.3 105 45.7
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 1.5e-08 65.9 60 56.7
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.7e-07 62.4 59 57.6
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 6.4e-07 60.5 80 43.8
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.2e-06 57.8 48 56.2
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 5.4e-06 57.4 70 41.4
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 5.4e-06 57.4 70 41.4
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 9.3e-06 56.6 50 52.0


User provided reference genes

Program Settings