Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024683 Daucus carota HOM05D002941 ORTHO05D007802 8.6e-19 95.9 46 100.0
DCAR_024684 Daucus carota HOM05D002941 ORTHO05D007802 1.1e-18 95.5 45 100.0
Hma1.2p1_0798F.1_g219710 Hydrangea macrophylla HOM05D002941 ORTHO05D007802 7.5e-15 82.8 45 80.0
Dinv42310 Davidia involucrata HOM05D002941 ORTHO05D007802 1.3e-14 82.0 45 80.0
Actinidia39722 Actinidia chinensis HOM05D002941 ORTHO05D007802 1.7e-14 81.6 45 77.8
Lj4C308T6 Lonicera japonica HOM05D002941 ORTHO05D007802 1.1e-13 79.0 45 77.8
Rhsim05G0022400 Rhododendron simsii HOM05D002941 ORTHO05D007802 1.4e-13 78.6 45 80.0
MSTRG.19522 Avicennia marina HOM05D002941 ORTHO05D007802 2.4e-13 77.8 44 77.3
CAN.G52.1 Capsicum annuum HOM05D002941 ORTHO05D007802 3.2e-13 77.4 45 73.3
Eucgr.C00903 Eucalyptus grandis HOM05D002941 ORTHO05D007802 4.1e-13 77.0 44 79.5
CSS0033517 Camellia sinensis var. sinensis HOM05D002941 ORTHO05D007802 5.4e-13 76.6 45 77.8
CSS0046192 Camellia sinensis var. sinensis HOM05D002941 ORTHO05D007802 5.4e-13 76.6 45 77.8
PGSC0003DMG400003266 Solanum tuberosum HOM05D002941 ORTHO05D007802 7.1e-13 76.3 45 73.3
Cfa003102 Carpinus fangiana HOM05D002941 ORTHO05D007802 9.2e-13 75.9 45 77.8
CiPaw.04G151200 Carya illinoinensis HOM05D002941 ORTHO05D007802 9.2e-13 75.9 45 77.8
Haze_25898 Corylus avellana HOM05D002941 ORTHO05D007802 9.2e-13 75.9 45 77.8
Oeu034044.1 Olea europaea HOM05D002941 ORTHO05D007802 9.2e-13 75.9 43 76.7
SGA_v2.0_scaffold10G05226 Striga asiatica HOM05D002941 ORTHO05D007802 1.2e-12 75.5 44 79.5
Atru.chr7.1573 Acer truncatum HOM05D002941 ORTHO05D007802 1.6e-12 75.1 45 73.3
Nitab4.5_0010222g0020 Nicotiana tabacum HOM05D002941 ORTHO05D007802 2.1e-12 74.7 45 71.1
Sopen07g013800 Solanum pennellii HOM05D002941 ORTHO05D007802 3.5e-12 73.9 45 71.1
Cc06_g11270 Coffea canephora HOM05D002941 ORTHO05D007802 4.6e-12 73.6 44 72.7
SalBow6G6088 Salvia bowleyana HOM05D002941 ORTHO05D007802 7.8e-12 72.8 40 82.5
Lsat_1_v5_gn_8_87601 Lactuca sativa HOM05D002941 ORTHO05D007802 1.0e-11 72.4 45 75.6
ECA236G2030 Erigeron canadensis HOM05D002941 ORTHO05D007802 1.3e-11 72.0 45 75.6
Nn6g35443 Nelumbo nucifera HOM05D002941 ORTHO05D007802 1.3e-11 72.0 47 74.5
QL02p062882 Quercus lobata HOM05D002941 ORTHO05D007802 1.3e-11 72.0 43 76.7
Sc14g0000760 Simmondsia chinensis HOM05D002941 ORTHO05D007802 1.3e-11 72.0 45 73.3
MELO3C004620.2 Cucumis melo HOM05D002941 ORTHO05D007802 2.3e-11 71.2 40 80.0
AUR62010087 Chenopodium quinoa HOM05D000128 ORTHO05D000059 3.0e-11 70.9 45 73.3
AUR62013083 Chenopodium quinoa HOM05D000128 ORTHO05D000059 3.9e-11 70.5 45 73.3
Manes.03G032700 Manihot esculenta HOM05D002941 ORTHO05D007802 3.9e-11 70.5 45 73.3
ClCG11G001810 Citrullus lanatus HOM05D002941 ORTHO05D007802 6.6e-11 69.7 40 77.5
EL10Ac9g21433 Beta vulgaris HOM05D002941 ORTHO05D007802 8.6e-11 69.3 45 71.1
Thecc.09G091200 Theobroma cacao HOM05D002941 ORTHO05D007802 8.6e-11 69.3 38 78.9
TAR626G1518 Trochodendron aralioides HOM05D002941 ORTHO05D007802 8.6e-11 69.3 47 70.2
CARHR237420 Cardamine hirsuta HOM05D002941 ORTHO05D007802 1.1e-10 68.9 47 70.2
Prupe.7G211700 Prunus persica HOM05D002941 ORTHO05D007802 1.9e-10 68.2 47 72.3
AL7G22790 Arabidopsis lyrata HOM05D002941 ORTHO05D007802 2.5e-10 67.8 47 70.2
BcaNung00480 Brassica carinata HOM05D002941 ORTHO05D007802 2.5e-10 67.8 47 70.2
A03p58970 Brassica napus HOM05D002941 ORTHO05D007802 2.5e-10 67.8 47 70.2
BolC7t46171H Brassica oleracea HOM05D002941 ORTHO05D007802 2.5e-10 67.8 47 70.2
CsaV3_2G001520 Cucumis sativus L. HOM05D002941 ORTHO05D007802 2.5e-10 67.8 40 75.0
COL.COLO4_18214 Corchorus olitorius HOM05D002941 ORTHO05D007802 3.3e-10 67.4 38 76.3
MD15G1205400 Malus domestica HOM05D002941 ORTHO05D007802 3.3e-10 67.4 47 72.3
vmacro17223 Vaccinium macrocarpon HOM05D002941 ORTHO05D007802 4.3e-10 67.0 37 78.4
Ah.01g022630 Amaranthus hybridus HOM05D000128 ORTHO05D000059 5.6e-10 66.6 45 71.1
AT4G29590 Arabidopsis thaliana HOM05D002941 ORTHO05D007802 5.6e-10 66.6 47 68.1
BraA03t14957Z Brassica rapa HOM05D002941 ORTHO05D007802 5.6e-10 66.6 47 68.1
Sed0001210 Sechium edule HOM05D002941 ORTHO05D007802 5.6e-10 66.6 40 75.0
Hund00041 Selenicereus undatus HOM05D002941 ORTHO05D007802 5.6e-10 66.6 45 66.7
Actinidia25259 Actinidia chinensis HOM05D002941 ORTHO05D007802 7.3e-10 66.2 45 68.9
Carub.0007s1097 Capsella rubella HOM05D002941 ORTHO05D007802 7.3e-10 66.2 47 68.1
PGR142G3357 Punica granatum HOM05D002941 ORTHO05D007802 7.3e-10 66.2 46 67.4
GSVIVG01015217001 Vitis vinifera HOM05D002941 ORTHO05D007802 7.3e-10 66.2 47 70.2
THA.LOC104803985 Tarenaya hassleriana HOM05D002941 ORTHO05D007802 9.5e-10 65.9 47 68.1
C07p56990 Brassica napus HOM05D002941 ORTHO05D007802 1.2e-09 65.5 47 68.1
Ciclev10008994m.g Citrus clementina HOM05D002941 ORTHO05D007802 1.2e-09 65.5 45 64.4
VMungo0464G0681 Vigna mungo HOM05D002941 ORTHO05D007802 2.1e-09 64.7 47 68.1
Aqoxy7G01242 Aquilegia oxysepala HOM05D002941 ORTHO05D007802 2.8e-09 64.3 47 66.0
Migut.J00598 Erythranthe guttata HOM05D002941 ORTHO05D007802 2.8e-09 64.3 41 75.6
Gorai.010G082100 Gossypium raimondii HOM05D002941 ORTHO05D007802 3.6e-09 63.9 38 73.7
HanXRQChr04g0126271 Helianthus annuus HOM05D002941 ORTHO05D007802 3.6e-09 63.9 37 78.4
TPR.G35490 Trifolium pratense HOM05D002941 ORTHO05D007802 3.6e-09 63.9 47 70.2
TWI34G1831 Tripterygium wilfordii HOM05D002941 ORTHO05D007802 3.6e-09 63.9 42 73.8
Cpa.g.sc885.1 Carica papaya HOM05D002941 ORTHO05D007802 6.2e-09 63.2 47 68.1
Lj2g0002582 Lotus japonicus HOM05D002941 ORTHO05D007802 6.2e-09 63.2 45 71.1
Gohir.D06G070400 Gossypium hirsutum HOM05D002941 ORTHO05D007802 1.4e-08 62.0 38 71.1
CSS0039563 Camellia sinensis var. sinensis HOM05D002941 ORTHO05D007802 1.8e-08 61.6 45 64.4
Lalb_Chr24g0393791 Lupinus albus HOM05D002941 ORTHO05D007802 1.8e-08 61.6 39 76.9
ATR0987G003 Amborella trichopoda HOM05D002941 ORTHO05D007802 2.4e-08 61.2 39 69.2
Duzib187G0758 Durio zibethinus HOM05D002941 ORTHO05D007802 2.4e-08 61.2 38 68.4
Thhalv10025782m.g Eutrema salsugineum HOM05D002941 ORTHO05D007802 2.4e-08 61.2 44 68.2
Gohir.A06G071900 Gossypium hirsutum HOM05D002941 ORTHO05D007802 2.4e-08 61.2 38 71.1
Psat1g050240 Pisum sativum HOM05D002941 ORTHO05D007802 2.4e-08 61.2 42 73.8
Potri.006G150500 Populus trichocarpa HOM05D002941 ORTHO05D007802 2.4e-08 61.2 45 57.8
Aa31LG2G20930 Aethionema arabicum HOM05D002941 ORTHO05D007802 3.1e-08 60.8 44 65.9
arahy.Tifrunner.gnm1.ann1.DY3U4J Arachis hypogaea HOM05D002941 ORTHO05D007802 3.1e-08 60.8 42 71.4
arahy.Tifrunner.gnm1.ann1.W9L9K2 Arachis hypogaea HOM05D002941 ORTHO05D007802 3.1e-08 60.8 42 71.4
FAN28G1853 Fragaria x ananassa HOM05D002941 ORTHO05D007802 3.1e-08 60.8 47 61.7
Glyma.07G129200 Glycine max HOM05D002941 ORTHO05D007802 3.1e-08 60.8 42 71.4
Medtr6g092630 Medicago truncatula HOM05D002941 ORTHO05D007802 3.1e-08 60.8 42 71.4
FvH4_1g07220 Fragaria vesca HOM05D002941 ORTHO05D007802 4.0e-08 60.5 47 61.7
FAN19G2976 Fragaria x ananassa HOM05D002941 ORTHO05D007802 4.0e-08 60.5 47 61.7
FAN23G2602 Fragaria x ananassa HOM05D002941 ORTHO05D007802 4.0e-08 60.5 47 61.7
FAN26G2201 Fragaria x ananassa HOM05D002941 ORTHO05D007802 4.0e-08 60.5 47 61.7
Phvul.004G171000 Phaseolus vulgaris HOM05D002941 ORTHO05D007802 6.8e-08 59.7 42 69.0
RcHm_v2.0_Chr2g0093121 Rosa chinensis HOM05D002941 ORTHO05D007802 6.8e-08 59.7 47 61.7
Sp7g27410 Schrenkiella parvula HOM05D002941 ORTHO05D007802 1.5e-07 58.5 44 63.6
SMO141G0088 Selaginella moellendorffii HOM05D002941 ORTHO05D007802 9.9e-07 55.8 40 57.5
Ca_25620_v3 Cicer arietinum L. HOM05D002941 ORTHO05D007802 1.7e-06 55.1 42 61.9
Os01g0712600 Oryza sativa ssp. japonica HOM05D002941 ORTHO05D007802 1.7e-06 55.1 47 57.4
PSO832G3360 Papaver somniferum HOM05D002941 ORTHO05D007802 2.2e-06 54.7 42 61.9
HPP92_009131 Vanilla planifolia HOM05D002941 ORTHO05D007802 2.9e-06 54.3 42 61.9
Zm00001eb361350 Zea mays HOM05D002941 ORTHO05D007802 2.9e-06 54.3 47 55.3
C07p56950 Brassica napus HOM05D002941 ORTHO05D007802 3.8e-06 53.9 45 62.2


User provided reference genes

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