Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 2.2e-35 151.8 75 100.0
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 2.0e-25 118.6 68 80.9
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.0e-25 118.6 72 76.4
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 4.5e-25 117.5 67 79.1
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 1.0e-24 116.3 68 79.4
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 1.0e-24 116.3 67 79.1
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 1.7e-24 115.5 65 83.1
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 2.9e-24 114.8 61 86.9
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 6.5e-24 113.6 73 74.0
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 6.5e-24 113.6 73 74.0
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 6.5e-24 113.6 65 80.0
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 6.5e-24 113.6 65 80.0
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 6.5e-24 113.6 65 80.0
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 6.5e-24 113.6 65 80.0
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 8.5e-24 113.2 73 74.0
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.1e-23 112.8 67 77.6
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 1.4e-23 112.5 67 77.6
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 3.2e-23 111.3 68 76.5
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 4.2e-23 110.9 65 80.0
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 5.5e-23 110.5 61 82.0
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 5.5e-23 110.5 61 82.0
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 5.5e-23 110.5 65 76.9
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 7.2e-23 110.2 69 73.9
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 9.4e-23 109.8 69 75.4
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.2e-22 109.4 70 72.9
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.1e-22 108.6 69 72.5
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 2.1e-22 108.6 67 74.6
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.7e-22 108.2 67 79.1
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.7e-22 108.2 61 80.3
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.7e-22 108.2 69 72.5
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 2.7e-22 108.2 61 82.0
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 3.6e-22 107.8 61 80.3
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 3.6e-22 107.8 65 76.9
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 3.6e-22 107.8 73 72.6
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 3.6e-22 107.8 65 75.4
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 4.7e-22 107.5 75 70.7
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 4.7e-22 107.5 55 89.1
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 4.7e-22 107.5 57 86.0
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 4.7e-22 107.5 60 81.7
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 4.7e-22 107.5 55 89.1
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 4.7e-22 107.5 67 76.1
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 4.7e-22 107.5 61 77.0
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 6.1e-22 107.1 71 73.2
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 6.1e-22 107.1 58 84.5
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 6.1e-22 107.1 55 87.3
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 8.0e-22 106.7 56 85.7
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 8.0e-22 106.7 72 70.8
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.0e-21 106.3 68 72.1
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 1.4e-21 105.9 66 74.2
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 1.4e-21 105.9 73 67.1
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.8e-21 105.5 61 78.7
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 2.3e-21 105.1 56 83.9
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 2.3e-21 105.1 56 83.9
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 3.0e-21 104.8 70 74.3
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 3.0e-21 104.8 66 74.2
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 3.0e-21 104.8 65 73.8
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.9e-21 104.4 65 73.8
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 3.9e-21 104.4 65 73.8
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 3.9e-21 104.4 66 75.8
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 6.7e-21 103.6 69 71.0
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 6.7e-21 103.6 66 72.7
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.1e-20 102.8 57 82.5
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 1.5e-20 102.4 55 85.5
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.5e-20 102.4 71 67.6
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 4.4e-20 100.9 70 68.6
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 4.4e-20 100.9 54 85.2
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 5.7e-20 100.5 51 90.2
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 5.7e-20 100.5 55 87.3
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 9.7e-20 99.8 73 65.8
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 1.3e-19 99.4 73 65.8
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 1.3e-19 99.4 55 83.6
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 1.3e-19 99.4 55 83.6
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 1.7e-19 99.0 53 84.9
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 2.2e-19 98.6 55 81.8
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 2.2e-19 98.6 55 81.8
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-19 97.8 53 83.0
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-19 97.8 53 83.0
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-19 97.8 53 83.0
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 3.7e-19 97.8 53 83.0
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 4.8e-19 97.4 53 83.0
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 1.4e-18 95.9 73 65.8
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 2.4e-18 95.1 53 83.0
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 3.1e-18 94.7 63 68.3
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 5.3e-18 94.0 57 78.9
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 1.2e-17 92.8 95 52.6
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 2.6e-17 91.7 98 50.0
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 3.5e-17 91.3 55 72.7
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 4.5e-17 90.9 72 65.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.0e-16 89.7 61 70.5
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 1.7e-16 89.0 52 80.8
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 2.2e-16 88.6 46 87.0
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 2.9e-16 88.2 54 70.4
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 8.5e-16 86.7 52 71.2
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.1e-15 86.3 45 86.7
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 1.1e-15 86.3 49 81.6
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 1.5e-15 85.9 45 86.7
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 3.2e-15 84.7 45 84.4
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 4.2e-15 84.3 44 86.4
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 1.6e-14 82.4 42 88.1
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 4.7e-14 80.9 44 84.1
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 8.8e-13 76.6 57 66.7
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.8e-11 71.6 37 89.2
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 4.8e-11 70.9 43 74.4
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.4e-10 69.3 43 72.1
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 7.7e-09 63.5 66 53.0
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.9e-08 61.6 43 65.1
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.5e-07 58.5 33 75.8
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 2.5e-07 58.5 33 75.8
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 4.2e-07 57.8 28 85.7


User provided reference genes

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