Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 4.8e-63 244.6 147 100.0
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 2.5e-35 152.5 122 67.2
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 3.2e-35 152.1 109 74.3
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 1.6e-34 149.8 121 68.6
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 2.1e-34 149.4 108 75.9
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 2.1e-34 149.4 109 72.5
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 2.7e-34 149.1 147 63.3
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 3.6e-34 148.7 121 68.6
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 6.1e-34 147.9 121 67.8
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 8.0e-34 147.5 108 75.0
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 1.0e-33 147.1 108 75.0
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 1.4e-33 146.7 114 69.3
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 1.8e-33 146.4 113 67.3
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 1.8e-33 146.4 109 68.8
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 2.3e-33 146.0 109 70.6
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 6.7e-33 144.4 121 66.1
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 6.7e-33 144.4 121 66.1
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 6.7e-33 144.4 108 73.1
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 3.3e-32 142.1 116 67.2
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 7.5e-32 141.0 111 66.7
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 7.5e-32 141.0 111 66.7
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 1.3e-31 140.2 111 70.3
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 1.7e-31 139.8 106 68.9
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 1.7e-31 139.8 109 68.8
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 2.2e-31 139.4 130 62.3
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 2.2e-31 139.4 107 67.3
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 2.8e-31 139.0 110 68.2
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 4.8e-31 138.3 108 70.4
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 4.8e-31 138.3 123 64.2
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 6.3e-31 137.9 122 63.1
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 8.2e-31 137.5 119 63.9
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 1.4e-30 136.7 118 61.9
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 1.4e-30 136.7 113 65.5
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 1.4e-30 136.7 116 62.9
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.4e-30 136.7 120 64.2
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 1.8e-30 136.3 121 60.3
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 1.8e-30 136.3 109 68.8
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 1.8e-30 136.3 112 66.1
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 2.4e-30 136.0 111 66.7
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 2.4e-30 136.0 124 60.5
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 2.4e-30 136.0 107 67.3
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 3.1e-30 135.6 111 71.2
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 3.1e-30 135.6 120 65.0
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 3.1e-30 135.6 106 67.9
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 4.1e-30 135.2 112 69.6
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 5.3e-30 134.8 108 64.8
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 1.6e-29 133.3 112 68.8
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 1.6e-29 133.3 110 70.0
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 1.6e-29 133.3 112 68.8
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 2.0e-29 132.9 110 70.0
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 2.0e-29 132.9 105 68.6
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 2.0e-29 132.9 122 63.1
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 2.7e-29 132.5 111 70.3
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 3.5e-29 132.1 109 70.6
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 3.5e-29 132.1 110 64.5
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 4.5e-29 131.7 105 68.6
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 4.5e-29 131.7 112 67.9
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 5.9e-29 131.3 109 70.6
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 7.7e-29 131.0 113 62.8
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 1.0e-28 130.6 123 60.2
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 1.3e-28 130.2 119 63.9
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 1.3e-28 130.2 108 68.5
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 1.3e-28 130.2 105 66.7
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 1.7e-28 129.8 105 66.7
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 2.9e-28 129.0 107 67.3
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 3.8e-28 128.6 119 63.0
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 3.8e-28 128.6 105 65.7
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 3.8e-28 128.6 109 64.2
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 8.5e-28 127.5 119 59.7
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 8.5e-28 127.5 105 67.6
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 8.5e-28 127.5 124 58.9
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 1.5e-27 126.7 127 60.6
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 1.5e-27 126.7 127 60.6
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 2.5e-27 125.9 109 62.4
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 2.5e-27 125.9 107 68.2
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 2.5e-27 125.9 112 62.5
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 3.2e-27 125.6 119 59.7
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 5.5e-27 124.8 103 68.9
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 5.5e-27 124.8 148 60.8
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 9.4e-27 124.0 115 64.3
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 9.4e-27 124.0 115 64.3
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 9.4e-27 124.0 115 64.3
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 9.4e-27 124.0 115 61.7
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 1.2e-26 123.6 107 64.5
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 1.6e-26 123.2 101 67.3
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 2.1e-26 122.9 124 58.1
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 2.1e-26 122.9 115 64.3
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.6e-26 122.1 115 63.5
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 6.1e-26 121.3 123 59.3
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 8.0e-26 120.9 89 74.2
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 8.0e-26 120.9 88 70.5
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 6.8e-25 117.9 139 49.6
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 8.8e-25 117.5 81 77.8
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 8.8e-25 117.5 87 71.3
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 8.8e-25 117.5 83 72.3
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 2.0e-24 116.3 109 58.7
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 5.7e-24 114.8 114 61.4
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 7.5e-24 114.4 88 67.0
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 3.7e-23 112.1 118 61.9
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 4.8e-23 111.7 105 60.0
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 6.3e-23 111.3 122 54.9
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 2.4e-22 109.4 108 56.5
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 2.8e-18 95.9 114 50.0
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 4.7e-18 95.1 127 43.3
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 8.0e-18 94.4 134 48.5
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 8.0e-18 94.4 75 61.3
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 1.8e-17 93.2 110 50.0
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 2.3e-17 92.8 83 63.9
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 3.7e-15 85.5 87 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 5.4e-14 81.6 82 53.7
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 4.5e-13 78.6 69 65.2
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 7.8e-13 77.8 106 49.1
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 7.8e-13 77.8 49 73.5
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 4.3e-11 72.0 50 68.0
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 4.3e-11 72.0 50 68.0
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 1.6e-10 70.1 83 49.4
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 1.0e-09 67.4 111 42.3
Nitab4.5_0000784g0080 Nicotiana tabacum HOM05D006881 ORTHO05D008423 1.1e-06 57.4 119 39.5


User provided reference genes

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