Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.1e-187 658.3 330 100.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 7.1e-131 471.1 331 71.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 6.0e-130 468.0 333 70.9
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.5e-128 463.4 307 73.3
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 9.5e-128 460.7 301 73.1
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 4.7e-127 458.4 306 71.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.0e-126 455.3 324 69.8
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.5e-125 453.4 301 72.1
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.8e-124 448.7 303 72.3
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 3.2e-123 445.7 302 71.9
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 9.2e-123 444.1 301 68.4
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 4.6e-122 441.8 301 71.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.0e-121 439.1 297 71.4
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 3.3e-120 435.6 301 69.8
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 3.3e-120 435.6 307 70.7
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 7.3e-120 434.5 301 69.4
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.3e-119 433.7 293 71.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.1e-119 433.0 322 66.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.8e-119 432.6 310 67.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.8e-119 431.8 306 68.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 8.1e-119 431.0 297 69.7
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.4e-118 430.3 297 70.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.1e-118 429.1 324 66.4
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.1e-118 429.1 307 69.4
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 4.0e-118 428.7 301 69.4
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 5.3e-118 428.3 299 68.6
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.3e-118 428.3 301 69.8
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.2e-117 427.2 303 68.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.5e-117 426.8 318 65.4
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.6e-117 424.5 323 66.6
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 9.9e-117 424.1 303 68.3
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 4.9e-116 421.8 303 68.0
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 4.9e-116 421.8 304 66.4
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 8.4e-116 421.0 323 66.6
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.1e-115 420.6 301 67.1
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 5.4e-115 418.3 303 68.0
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 7.1e-115 417.9 325 63.7
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 9.3e-115 417.5 300 67.0
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.1e-114 416.4 276 73.2
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 2.1e-114 416.4 296 67.6
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.5e-114 415.6 331 65.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.5e-114 415.6 296 68.6
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 6.0e-114 414.8 302 64.6
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.8e-114 414.5 310 63.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.7e-113 413.3 301 65.1
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.9e-113 412.1 296 67.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 5.1e-113 411.8 303 67.7
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.9e-112 409.8 311 63.0
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.5e-112 409.5 302 64.2
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 7.3e-112 407.9 318 61.6
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.6e-111 406.8 302 62.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.1e-111 406.4 324 61.7
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.1e-111 406.4 302 62.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 4.8e-111 405.2 301 63.5
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 8.1e-111 404.4 297 66.0
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.1e-111 404.4 302 62.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.1e-110 404.1 298 64.1
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-110 403.7 328 60.7
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-110 403.3 349 61.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.4e-110 402.9 304 62.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.5e-109 400.2 324 60.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 4.5e-109 398.7 328 61.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.6e-109 397.9 304 63.5
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.7e-108 396.7 322 60.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 8.4e-108 394.4 328 59.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.4e-107 393.7 303 62.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 3.2e-107 392.5 314 61.5
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 5.4e-107 391.7 303 62.4
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 9.3e-107 391.0 303 62.7
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 9.3e-107 391.0 314 61.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.7e-106 389.4 303 62.4
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.7e-106 389.4 303 62.4
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 4.6e-106 388.7 303 62.0
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 4.6e-106 388.7 331 58.6
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.3e-105 387.1 320 60.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.8e-105 386.7 303 62.0
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 3.9e-105 385.6 297 61.3
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 5.1e-105 385.2 254 73.2
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 8.7e-105 384.4 298 62.4
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 8.7e-105 384.4 306 60.8
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 7.4e-104 381.3 298 60.4
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.4e-102 377.1 288 63.9
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 2.4e-102 376.3 298 60.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.1e-102 375.9 333 56.5
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.3e-102 375.2 335 58.8
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 9.0e-102 374.4 298 61.4
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 1.2e-101 374.0 351 55.3
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-101 374.0 306 60.1
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.5e-101 373.6 303 60.4
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.6e-101 372.9 297 59.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.8e-101 371.7 317 55.8
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.8e-100 369.0 298 58.1
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.1e-99 367.5 319 56.4
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 5.5e-99 365.2 302 57.3
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 4.6e-98 362.1 229 74.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.5e-96 357.1 300 57.0
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.8e-95 352.8 234 70.9
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.3e-94 348.6 325 53.2
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 9.0e-94 347.8 294 57.5
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.2e-93 347.4 297 56.2
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.0e-92 344.4 322 57.5
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.9e-91 340.1 295 54.9
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.1e-88 330.9 293 54.6
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.9e-85 318.5 252 63.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 8.5e-84 314.7 340 50.3
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.6e-82 310.5 228 64.9
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 8.5e-76 288.1 205 68.8
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.1e-75 287.7 212 61.8
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-75 287.7 236 60.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 8.8e-73 278.1 182 69.8
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.4e-70 270.8 185 66.5
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 6.5e-68 261.9 304 49.3
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 9.4e-67 258.1 266 52.3
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.6e-58 230.7 175 64.0
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.8e-54 217.2 192 57.8
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.9e-43 180.6 270 38.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-40 171.0 132 62.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.2e-39 167.2 122 66.4
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.8e-34 150.2 159 49.1
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 8.9e-33 145.2 310 30.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.4e-32 142.9 300 29.7
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.7e-31 141.0 124 58.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 7.8e-29 132.1 181 38.1
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 8.6e-28 128.6 76 76.3
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 4.7e-26 122.9 139 43.2
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 2.2e-23 114.0 145 46.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.0e-20 105.1 217 31.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.0e-20 105.1 68 69.1
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.3e-20 104.8 86 64.0
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.3e-20 104.0 88 61.4
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 8.6e-20 102.1 249 25.7
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-18 97.4 97 52.6
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 4.0e-17 93.2 111 45.0
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.7e-15 87.8 273 24.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 5.1e-12 76.3 51 68.6
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.3e-11 73.6 73 57.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.1e-10 70.9 300 21.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.4e-09 67.4 63 54.0


User provided reference genes

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