Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 2.9e-243 844.7 410 100.0
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 2.5e-162 575.9 333 84.4
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.1e-55 220.7 298 46.3
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 5.6e-53 212.6 291 44.7
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.2e-47 194.9 266 44.7
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 7.9e-47 192.2 335 35.8
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.6e-44 184.5 330 40.0
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.2e-40 169.9 366 35.8
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 7.1e-40 169.1 279 40.5
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.6e-39 166.4 329 36.5
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 3.0e-38 163.7 293 41.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 5.1e-38 162.9 313 37.4
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 6.7e-38 162.5 371 33.7
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.9e-37 161.0 288 38.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.4e-37 159.1 370 33.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.1e-36 157.5 400 33.0
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 6.3e-36 156.0 307 38.4
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.4e-35 154.8 249 40.2
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.1e-35 153.3 280 37.1
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 6.9e-35 152.5 341 34.9
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.2e-34 151.8 281 39.5
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.0e-34 151.0 299 38.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 5.9e-34 149.4 297 36.7
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 1.3e-33 148.3 259 40.2
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.3e-33 148.3 355 34.1
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 2.2e-33 147.5 301 37.5
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.2e-33 147.5 279 35.8
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.8e-33 146.7 342 33.6
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 3.8e-33 146.7 300 35.3
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 3.8e-33 146.7 345 32.8
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 3.8e-33 146.7 317 34.1
DCAR_028159 Daucus carota HOM05D000128 ORTHO05D000059 4.2e-32 143.3 81 85.2
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.2e-31 141.7 310 34.8
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.6e-31 141.4 357 33.9
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.1e-31 141.0 343 32.9
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.3e-30 137.5 303 36.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 6.7e-30 136.0 257 40.1
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 6.7e-30 136.0 233 37.8
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.1e-29 135.2 323 33.1
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.5e-29 134.8 299 35.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.5e-29 134.8 300 36.3
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.9e-29 134.4 359 31.8
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.3e-29 133.3 212 37.3
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.6e-28 131.3 328 35.4
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.6e-28 131.3 359 32.3
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.6e-28 131.3 312 33.7
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.7e-28 130.2 300 36.3
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 4.8e-28 129.8 345 30.4
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.8e-28 129.8 362 31.2
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.8e-28 129.8 277 33.9
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 8.2e-28 129.0 294 33.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.1e-27 128.6 224 38.8
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 6.9e-27 125.9 300 32.3
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 9.0e-27 125.6 357 30.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.6e-26 124.0 327 31.8
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.5e-26 123.2 286 36.0
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 5.9e-26 122.9 363 35.0
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 7.7e-26 122.5 313 33.2
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.0e-25 122.1 222 38.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.7e-25 121.3 383 29.8
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 8.5e-25 119.0 349 30.7
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 1.4e-24 118.2 295 35.9
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.5e-24 117.5 357 31.9
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.2e-23 115.2 199 39.2
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.1e-23 114.4 388 28.6
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.7e-23 114.0 300 34.3
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 2.3e-22 110.9 349 31.5
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.3e-22 110.9 333 28.5
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.3e-22 110.9 338 31.7
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.0e-21 107.8 190 36.8
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 7.4e-21 105.9 300 32.3
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 4.8e-20 103.2 317 29.7
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 4.8e-20 103.2 219 32.9
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 8.2e-20 102.4 254 33.5
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 8.2e-20 102.4 316 30.4
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.4e-19 101.7 371 30.2
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.4e-19 100.9 260 33.5
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.2e-18 98.6 293 29.7
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.2e-18 98.6 282 31.2
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.2e-18 98.6 317 29.3
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.5e-18 98.2 279 28.7
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 3.4e-18 97.1 256 33.6
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 3.4e-18 97.1 245 31.8
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 3.4e-18 97.1 278 31.7
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 7.7e-18 95.9 343 29.4
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.0e-17 95.5 308 31.5
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.2e-17 94.4 215 32.6
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 2.9e-17 94.0 283 31.1
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 5.0e-17 93.2 362 28.2
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 8.5e-17 92.4 276 27.5
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.1e-16 92.0 301 31.2
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.1e-16 92.0 303 30.4
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 2.5e-16 90.9 418 28.5
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 3.2e-16 90.5 309 29.1
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 3.2e-16 90.5 308 30.8
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 9.4e-16 89.0 238 31.1
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 2.1e-15 87.8 278 30.6
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 2.7e-15 87.4 340 30.0
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 2.7e-15 87.4 290 30.3
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 2.7e-15 87.4 235 31.5
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 4.7e-15 86.7 272 30.5
DCAR_017404 Daucus carota HOM05D022569 ORTHO05D178128 1.4e-14 85.1 72 52.8
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.0e-14 84.0 309 30.4
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 8.8e-14 82.4 391 27.9
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.5e-13 81.6 224 33.9
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 1.5e-13 81.6 319 28.5
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 3.3e-13 80.5 202 33.2
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 5.7e-13 79.7 204 32.4
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.3e-12 78.6 243 32.5
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.3e-12 78.6 331 28.4
DCAR_017339 Daucus carota HOM05D004122 ORTHO05D004468 1.3e-12 78.6 87 44.8
DCAR_000259 Daucus carota HOM05D022569 ORTHO05D006345 2.2e-12 77.8 61 54.1
DCAR_018537 Daucus carota HOM05D022569 ORTHO05D006345 2.2e-12 77.8 61 54.1
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 3.7e-12 77.0 241 33.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 6.3e-12 76.3 315 25.1
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.1e-11 75.5 245 31.4
DCAR_029799 Daucus carota HOM05D022569 ORTHO05D006345 1.8e-11 74.7 75 48.0
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.4e-11 74.3 98 39.8
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-11 73.9 152 38.2
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-10 72.0 313 30.4
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.0e-10 71.2 173 31.2
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 3.5e-10 70.5 217 32.7
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.5e-10 70.5 313 30.0
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 2.9e-09 67.4 214 29.4
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.1e-08 65.5 340 26.8
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 3.6e-07 60.5 140 33.6
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 6.1e-07 59.7 136 32.4
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 6.1e-07 59.7 198 24.7
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 1.0e-06 58.9 361 24.9
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 3.0e-06 57.4 280 29.6
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 5.2e-06 56.6 181 29.3


User provided reference genes

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