Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.8e-260 902.1 468 100.0
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 9.0e-156 554.3 476 61.1
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 4.9e-154 548.5 471 62.6
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.9e-153 546.6 475 61.7
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.5e-153 545.0 477 60.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.6e-152 543.5 477 61.0
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 2.1e-152 543.1 476 60.9
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 5.7e-150 535.0 474 59.7
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.8e-149 532.7 396 67.9
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.4e-148 530.4 471 59.7
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.5e-147 526.9 476 59.2
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.0e-147 526.6 471 58.6
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 2.0e-147 526.6 474 57.8
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.4e-147 525.8 470 59.1
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 2.5e-145 519.6 479 59.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 4.2e-145 518.8 476 57.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 4.2e-145 518.8 473 57.5
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 7.1e-145 518.1 474 57.2
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.3e-145 517.7 476 58.6
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.6e-144 516.9 475 59.6
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 4.6e-144 515.4 471 58.2
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.9e-144 514.6 473 56.2
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.9e-144 514.6 476 57.8
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.0e-143 514.2 468 57.3
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.3e-143 513.8 473 56.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.3e-143 513.1 476 55.7
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.0e-143 512.7 476 57.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 3.0e-143 512.7 468 58.8
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 5.1e-143 511.9 478 56.1
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.1e-143 511.9 476 55.7
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 8.7e-143 511.1 474 56.5
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 8.7e-143 511.1 460 57.6
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.9e-142 510.0 407 63.1
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 1.9e-142 510.0 407 62.9
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.3e-142 509.2 409 62.3
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 4.3e-142 508.8 479 55.7
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 5.7e-142 508.4 458 57.2
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.3e-141 507.3 470 56.2
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.6e-141 506.9 476 56.7
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.8e-141 506.1 470 57.7
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 8.2e-141 504.6 476 56.9
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.8e-140 503.4 419 61.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.8e-140 503.4 470 57.0
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.4e-140 503.1 460 57.2
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.4e-140 503.1 466 56.2
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.3e-140 501.9 428 60.7
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.9e-140 501.5 428 60.7
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.6e-139 499.6 469 56.3
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 4.5e-139 498.8 474 56.5
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 5.9e-139 498.4 404 61.6
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.0e-138 497.7 473 56.2
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 6.5e-138 495.0 469 55.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 6.5e-138 495.0 477 54.9
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 8.5e-138 494.6 475 56.2
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.9e-137 493.4 467 55.5
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.2e-137 492.7 467 55.9
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.2e-137 492.7 467 55.9
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 5.5e-137 491.9 404 60.9
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.6e-136 490.3 452 58.0
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-136 489.6 468 56.8
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.6e-136 489.2 409 60.4
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 7.9e-136 488.0 468 56.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.8e-135 486.9 470 55.5
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 2.3e-135 486.5 479 54.3
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.3e-135 486.5 473 55.0
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.7e-135 485.0 406 60.1
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 6.7e-135 485.0 473 54.3
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.0e-134 483.4 476 56.1
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.3e-134 482.3 473 53.9
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 9.7e-134 481.1 335 69.6
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 9.7e-134 481.1 463 54.4
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.2e-131 474.2 473 55.0
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.5e-131 473.8 438 57.3
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 4.5e-131 472.2 434 56.9
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.7e-130 470.3 471 55.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 8.5e-130 468.0 471 57.5
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 7.2e-129 464.9 400 57.5
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.2e-128 464.2 469 54.2
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.6e-128 463.8 471 57.7
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.6e-128 463.8 472 56.1
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.7e-128 463.0 469 54.4
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 7.9e-128 461.5 477 53.7
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.0e-127 461.1 478 56.3
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.4e-127 460.7 469 56.1
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 3.0e-127 459.5 469 54.2
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 5.1e-127 458.8 471 55.2
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.1e-126 457.6 473 54.1
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 5.3e-124 448.7 399 59.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 2.6e-123 446.4 396 59.8
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 7.7e-123 444.9 399 57.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.1e-120 436.8 418 57.2
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.0e-119 434.5 334 63.2
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.6e-118 429.9 428 56.1
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.1e-116 422.9 425 53.6
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.4e-108 397.5 317 65.9
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.7e-106 390.6 479 46.1
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 3.8e-106 389.4 399 52.1
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 6.5e-106 388.7 394 52.3
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.5e-105 386.7 421 50.6
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 3.5e-99 366.3 400 48.8
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.1e-97 361.3 419 50.1
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.1e-96 357.1 405 46.7
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 4.3e-81 306.2 331 51.7
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.6e-81 305.8 218 68.3
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-65 254.6 185 65.4
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.1e-64 250.8 397 39.0
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.2e-60 236.5 337 44.5
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.5e-46 191.4 250 45.6
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.8e-42 177.9 205 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 1.3e-40 171.8 319 32.6
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 5.1e-26 123.2 106 52.8
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 3.2e-20 104.0 148 45.3
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 2.7e-19 100.9 295 31.5
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.9e-15 86.3 156 41.0
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.1e-15 85.9 72 56.9
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.3e-10 71.2 310 21.9
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.2e-08 64.7 91 45.1
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.2e-08 64.7 121 42.1
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 4.8e-08 63.5 138 25.4
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 5.3e-07 60.1 152 25.7
MBI15_g27201_MAGBIO Magnolia biondii HOM05D006258 ORTHO05D007961 5.3e-07 60.1 191 21.5
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 1.2e-06 58.9 156 25.0
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.2e-06 58.9 156 25.0
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 2.0e-06 58.2 154 26.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.0e-06 58.2 146 25.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 4.5e-06 57.0 124 25.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 5.9e-06 56.6 108 27.8
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 5.9e-06 56.6 124 25.8


User provided reference genes

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