Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 3.3e-127 458.4 228 100.0
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 2.2e-91 339.3 200 80.0
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 4.2e-90 335.1 231 70.1
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 5.5e-90 334.7 231 71.0
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.2e-89 333.6 230 72.2
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.1e-89 332.8 217 75.6
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 2.7e-89 332.4 220 73.6
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 4.6e-89 331.6 235 71.5
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.3e-88 330.1 233 70.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 1.8e-88 329.7 227 72.2
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 2.3e-88 329.3 224 73.2
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 3.0e-88 328.9 220 74.1
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 3.9e-88 328.6 232 71.1
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.9e-88 328.6 219 72.1
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 8.7e-88 327.4 227 70.9
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.1e-87 327.0 231 68.8
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.9e-87 326.2 220 74.1
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 2.5e-87 325.9 220 74.1
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 3.3e-87 325.5 222 73.0
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 3.3e-87 325.5 231 68.0
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 5.7e-87 324.7 220 73.6
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 5.7e-87 324.7 217 71.9
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 7.4e-87 324.3 232 71.6
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 7.4e-87 324.3 232 70.7
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 9.6e-87 323.9 232 70.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 9.6e-87 323.9 231 68.8
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.6e-86 323.2 225 71.6
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.6e-86 323.2 273 61.9
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 1.6e-86 323.2 224 70.5
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 1.6e-86 323.2 242 67.4
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 2.8e-86 322.4 229 68.6
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 3.7e-86 322.0 226 69.5
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 4.8e-86 321.6 223 72.2
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 6.2e-86 321.2 222 70.7
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 6.2e-86 321.2 223 70.9
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.1e-85 320.5 228 68.4
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 1.4e-85 320.1 223 72.2
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 4.0e-85 318.5 223 72.2
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 4.0e-85 318.5 226 69.9
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 5.3e-85 318.2 224 68.3
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 9.0e-85 317.4 235 68.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 1.2e-84 317.0 227 68.7
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.5e-84 316.6 220 72.3
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 2.0e-84 316.2 223 69.1
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 2.6e-84 315.8 226 68.6
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.4e-84 315.5 219 70.3
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 4.5e-84 315.1 229 67.7
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 7.6e-84 314.3 223 70.9
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 7.6e-84 314.3 221 68.3
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 7.6e-84 314.3 221 67.9
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.0e-83 313.9 223 70.4
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 2.9e-83 312.4 220 70.5
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.8e-83 312.0 218 69.7
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 3.8e-83 312.0 212 74.1
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 6.5e-83 311.2 220 68.6
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 6.5e-83 311.2 231 66.7
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 8.4e-83 310.8 228 68.4
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.4e-82 310.1 217 67.7
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.4e-82 310.1 222 69.8
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.4e-82 310.1 221 69.7
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 1.4e-82 310.1 223 68.2
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 5.5e-82 308.1 232 66.8
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 7.1e-82 307.8 269 58.7
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.2e-81 307.0 187 78.1
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 3.5e-81 305.4 215 68.8
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 6.1e-81 304.7 201 72.6
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 6.1e-81 304.7 268 58.6
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.0e-80 303.9 270 58.1
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 3.9e-80 302.0 235 63.8
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 5.1e-80 301.6 213 68.5
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.1e-80 301.6 231 64.5
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.5e-79 300.1 227 64.3
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 5.7e-79 298.1 220 65.9
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 5.7e-79 298.1 219 66.7
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.3e-78 297.0 220 65.0
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 3.7e-78 295.4 219 66.2
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 3.7e-78 295.4 218 66.1
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 4.8e-78 295.0 229 65.1
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 8.2e-78 294.3 224 65.6
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 1.4e-77 293.5 222 64.4
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.4e-77 293.5 178 78.1
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.8e-77 293.1 173 78.6
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.2e-76 290.4 222 64.9
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 2.6e-76 289.3 223 64.1
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 2.6e-76 289.3 223 64.1
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 5.9e-76 288.1 219 65.3
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.0e-75 287.3 217 64.5
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.0e-75 287.3 176 79.5
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.3e-75 287.0 224 63.8
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.7e-75 286.6 173 78.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 1.7e-75 286.6 219 62.6
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.1e-74 283.9 221 63.8
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 1.4e-74 283.5 222 62.6
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.6e-73 280.0 228 60.5
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 2.7e-73 279.3 219 63.5
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 3.6e-73 278.9 198 71.2
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 3.3e-71 272.3 246 55.7
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 4.1e-69 265.4 219 60.3
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 1.4e-66 256.9 183 65.6
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 5.5e-66 255.0 215 60.5
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 4.7e-65 251.9 232 54.7
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.3e-64 249.6 237 52.7
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 4.4e-63 245.4 152 82.2
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.8e-62 242.7 179 64.2
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.2e-60 237.3 142 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 1.3e-59 233.8 224 52.7
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 2.1e-57 226.5 151 70.2
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.8e-56 223.4 139 71.9
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 3.0e-56 222.6 219 53.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 5.7e-55 218.4 144 73.6
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 3.7e-54 215.7 151 66.9
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 6.3e-54 214.9 144 72.9
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 6.5e-51 204.9 143 72.0
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 8.8e-48 194.5 194 54.6
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.3e-46 190.7 141 69.5
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.2e-40 168.7 146 58.9
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 6.1e-33 145.2 173 38.2
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.4e-32 144.1 179 48.0
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 5.0e-27 125.6 198 35.9
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.4e-23 112.5 64 82.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 3.9e-19 99.4 137 43.8
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 7.8e-12 75.1 35 91.4
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.2e-07 61.2 99 40.4
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 3.7e-06 56.2 96 37.5
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 6.4e-06 55.5 58 41.4


User provided reference genes

Program Settings