Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 0.0e+00 1796.6 922 100.0
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.3e-307 1059.7 994 59.7
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.7e-299 1032.7 951 60.4
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.6e-297 1026.2 997 58.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.7e-294 1015.0 990 58.6
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.7e-286 989.6 996 56.8
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 5.0e-283 978.0 933 58.1
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 4.2e-282 974.9 989 55.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 3.9e-280 968.4 1003 55.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 8.8e-280 967.2 981 55.7
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 5.7e-279 964.5 938 57.9
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 7.4e-279 964.1 968 55.6
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.3e-278 963.4 963 56.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 6.3e-278 961.1 988 55.1
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 9.4e-274 947.2 982 55.8
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.4e-272 943.3 961 55.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.0e-271 939.5 947 55.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.6e-271 939.1 948 56.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 7.4e-271 937.6 950 56.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 9.7e-271 937.2 1022 52.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 9.7e-271 937.2 982 55.6
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.8e-270 935.6 944 56.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 5.9e-268 927.9 1158 49.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.8e-267 925.2 950 55.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.1e-266 923.7 962 55.9
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 7.2e-266 921.0 923 56.7
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 3.6e-265 918.7 956 55.2
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.6e-265 918.7 954 55.6
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.6e-265 918.7 1024 52.1
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 6.1e-265 917.9 1069 50.6
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.4e-264 916.8 978 54.5
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.3e-264 916.0 1010 53.1
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.3e-264 916.0 950 56.1
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.0e-264 915.6 977 55.4
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 3.0e-264 915.6 949 56.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 3.0e-264 915.6 1010 53.1
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.7e-264 914.4 925 57.1
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 6.3e-262 907.9 959 54.5
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.4e-261 906.7 957 53.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.2e-260 903.7 1035 51.3
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 5.9e-260 901.4 937 55.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 7.7e-260 901.0 948 54.0
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.9e-259 899.0 939 53.8
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.9e-259 899.0 1004 51.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 4.2e-258 895.2 723 64.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 7.2e-258 894.4 964 54.3
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 9.4e-258 894.0 938 53.7
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 9.4e-258 894.0 962 54.0
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.7e-257 891.7 939 54.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.0e-256 890.6 1019 50.5
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 6.8e-256 887.9 1108 49.4
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.4e-255 885.6 940 54.1
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.6e-252 876.7 883 55.8
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.5e-252 875.5 951 53.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.9e-252 874.8 958 52.8
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 7.7e-252 874.4 968 53.1
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.2e-249 867.1 953 52.3
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 3.6e-249 865.5 961 53.9
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 8.0e-249 864.4 991 51.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.0e-248 864.0 950 52.5
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 5.2e-248 861.7 946 53.1
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.5e-247 860.1 986 51.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 3.4e-247 859.0 995 51.0
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 5.7e-247 858.2 954 52.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.7e-246 856.7 938 52.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.1e-245 854.0 989 51.1
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.4e-245 852.8 982 51.0
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.3e-243 847.0 1018 51.0
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.3e-243 847.0 963 51.9
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.0e-240 837.4 951 52.5
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.8e-240 836.6 932 51.4
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.2e-240 835.1 979 50.5
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.8e-240 834.7 928 52.6
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 6.8e-240 834.7 961 52.4
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 4.9e-238 828.6 951 51.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.1e-237 827.4 955 51.8
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.4e-237 826.2 946 53.2
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.2e-237 825.9 952 51.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.6e-236 823.5 949 52.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.0e-235 820.8 954 50.7
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.5e-234 817.0 960 50.2
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.6e-233 813.5 968 49.7
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.4e-232 810.4 924 51.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.4e-232 810.4 995 47.8
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.0e-232 808.9 994 48.7
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 7.5e-231 804.7 930 51.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.7e-230 803.5 959 48.7
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 2.2e-230 803.1 932 51.1
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.9e-230 802.7 929 51.0
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.9e-229 800.0 1007 47.8
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.5e-228 795.8 755 58.1
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 5.2e-224 781.9 933 50.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-224 781.6 932 50.2
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 4.9e-222 775.4 931 49.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 6.0e-220 768.5 992 49.1
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 3.0e-219 766.1 671 59.6
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.9e-219 765.8 727 55.6
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 5.1e-219 765.4 700 58.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 6.6e-219 765.0 959 49.0
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 2.5e-218 763.1 995 47.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 3.3e-218 762.7 950 48.3
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.6e-217 760.4 675 59.3
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.1e-217 760.0 676 59.0
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 9.9e-215 751.1 882 49.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 2.2e-214 750.0 692 57.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 8.4e-214 748.0 774 52.5
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.1e-213 747.7 957 49.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 2.5e-210 736.5 672 56.2
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 3.6e-209 732.6 738 54.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.9e-206 723.0 934 48.7
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.8e-193 679.9 715 51.5
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 3.4e-191 672.9 754 48.7
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 3.8e-190 669.5 738 49.7
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.0e-170 604.0 1000 39.3
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.2e-169 600.5 1036 39.5
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 9.7e-162 575.1 708 45.8
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.8e-161 573.5 863 42.5
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.1e-152 545.0 675 44.7
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.3e-131 474.2 713 44.7
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-127 461.8 667 41.5
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.4e-104 385.2 305 61.3
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 9.2e-104 382.5 559 37.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.0e-102 377.5 480 40.8
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.4e-99 367.9 970 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 7.6e-90 336.3 525 37.1
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-41 176.0 115 72.2
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.2e-39 169.5 115 70.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.8e-27 129.0 370 28.4
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.2e-26 126.3 146 46.6
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.0e-26 125.6 190 43.2
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.4e-19 100.9 334 36.2
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 9.5e-16 90.1 153 40.5
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.2e-15 89.7 153 40.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 3.0e-14 85.1 83 56.6
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 6.8e-14 84.0 106 44.3
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.9e-12 78.6 106 43.4
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.5e-08 65.5 65 55.4
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 8.9e-06 57.0 88 39.8


User provided reference genes

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