Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.1e-115 419.1 218 100.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 3.3e-108 395.2 219 95.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 5.2e-74 281.6 219 68.9
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-50 204.1 220 52.3
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.7e-48 196.8 205 54.6
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.9e-45 185.7 228 48.7
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.7e-45 184.9 224 49.1
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.7e-45 184.9 207 48.8
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.1e-44 184.1 218 48.2
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.1e-44 184.1 218 47.7
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.5e-44 183.7 214 47.7
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.9e-44 183.3 224 47.8
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.3e-43 180.6 187 54.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.6e-43 180.3 194 52.6
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.8e-43 179.5 220 47.3
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.8e-43 178.7 187 53.5
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.8e-43 178.7 218 46.3
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 4.8e-43 178.7 208 47.6
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 6.3e-43 178.3 214 47.7
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.3e-43 178.3 208 48.6
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 6.3e-43 178.3 219 47.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.2e-43 177.9 203 49.8
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 8.2e-43 177.9 218 46.8
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.8e-42 176.8 218 47.7
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 9.0e-42 174.5 218 46.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.2e-41 174.1 214 47.2
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 4.5e-41 172.2 215 47.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 5.9e-41 171.8 225 48.0
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.9e-41 171.8 171 55.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 5.9e-41 171.8 212 47.2
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.0e-40 171.0 215 49.3
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.0e-40 171.0 145 59.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.0e-40 171.0 145 59.3
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.0e-40 171.0 204 45.6
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.7e-40 170.2 225 47.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.7e-40 170.2 210 46.7
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.9e-40 169.5 175 54.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 5.0e-40 168.7 212 46.7
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.1e-39 167.5 202 49.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.9e-39 166.8 212 48.6
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 2.5e-39 166.4 220 46.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.5e-39 166.4 220 45.5
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 3.2e-39 166.0 175 50.9
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 3.2e-39 166.0 173 52.6
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.2e-39 166.0 209 47.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 4.2e-39 165.6 178 52.2
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.5e-39 165.2 202 49.0
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 5.5e-39 165.2 214 45.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 5.5e-39 165.2 214 47.2
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.6e-38 163.7 215 43.7
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.1e-38 163.3 178 51.7
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.7e-38 162.9 215 47.0
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.6e-38 162.5 199 46.7
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.0e-37 161.0 166 54.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.3e-37 159.8 211 44.5
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.3e-37 159.8 194 52.1
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.1e-37 158.7 204 47.5
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.1e-37 158.7 210 47.1
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.5e-36 157.1 163 54.0
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.9e-36 156.8 199 46.7
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.9e-36 156.8 215 45.1
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 5.7e-36 155.2 185 49.2
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 9.7e-36 154.5 219 42.9
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 4.8e-35 152.1 219 42.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 6.3e-35 151.8 171 48.0
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 6.3e-35 151.8 218 42.2
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 6.3e-35 151.8 163 51.5
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.1e-34 151.0 219 42.0
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.4e-34 150.6 163 50.3
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.8e-34 150.2 220 46.4
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.8e-34 150.2 220 44.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.4e-34 149.8 163 49.7
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 9.1e-34 147.9 163 50.3
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.5e-33 147.1 212 44.3
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.6e-33 146.4 210 42.4
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.4e-33 146.0 220 40.9
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.4e-33 146.0 173 48.6
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.3e-32 144.1 158 50.6
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-32 144.1 174 47.1
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.7e-32 143.7 137 57.7
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.9e-31 140.2 166 47.6
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 5.5e-31 138.7 170 48.2
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 7.2e-31 138.3 304 34.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 9.4e-31 137.9 196 44.4
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.6e-30 136.0 170 48.2
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.1e-30 135.2 215 42.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.0e-29 134.4 173 47.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.7e-28 128.6 162 45.1
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 7.4e-28 128.3 190 41.1
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 7.4e-28 128.3 221 38.5
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.3e-27 127.5 224 42.0
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.8e-27 126.3 217 40.1
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 2.8e-27 126.3 176 43.8
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.7e-27 125.9 216 38.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 3.7e-27 125.9 111 57.7
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 8.2e-27 124.8 176 41.5
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 8.2e-27 124.8 162 44.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 3.1e-26 122.9 141 48.9
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 4.1e-26 122.5 148 48.0
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 5.3e-26 122.1 170 43.5
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.1e-26 121.3 138 48.6
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.2e-25 120.9 213 36.6
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.0e-25 120.2 138 48.6
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.0e-25 120.2 225 40.4
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 3.4e-25 119.4 192 38.0
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 4.5e-25 119.0 222 36.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 7.7e-25 118.2 154 40.9
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 7.7e-25 118.2 130 46.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.0e-24 117.9 183 42.1
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.3e-24 117.5 142 42.3
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.7e-24 117.1 113 55.8
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-24 117.1 193 38.9
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.2e-24 116.7 151 40.4
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.9e-24 116.3 81 66.7
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 3.8e-24 115.9 103 57.3
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 6.5e-24 115.2 188 38.8
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 8.5e-24 114.8 170 40.0
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-23 114.0 142 41.5
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.4e-23 114.0 176 40.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.9e-23 113.6 209 37.3
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.9e-23 113.6 170 40.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-23 112.8 81 65.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.2e-23 112.5 147 43.5
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 7.2e-23 111.7 160 41.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.2e-22 110.9 181 35.9
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.7e-22 109.8 196 36.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.7e-22 109.8 129 48.8
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 3.6e-22 109.4 89 59.6
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.7e-22 109.0 131 45.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 6.1e-22 108.6 131 43.5
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.1e-22 108.6 109 51.4
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.0e-21 107.8 135 45.2
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.3e-21 106.7 148 43.2
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.3e-21 106.7 175 37.1
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 5.2e-21 105.5 175 37.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 4.4e-20 102.4 125 45.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 4.4e-20 102.4 113 48.7
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.4e-20 102.4 82 61.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 7.0e-18 95.1 145 37.9
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 7.0e-18 95.1 142 37.3
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 9.1e-18 94.7 138 41.3
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.6e-17 94.0 175 33.1
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.2e-16 90.1 74 63.5
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.1e-15 87.8 71 60.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.9e-15 87.0 186 33.3
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 9.4e-15 84.7 118 41.5
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.2e-14 84.3 179 34.1
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.7e-14 83.2 105 40.0
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 3.0e-13 79.7 63 57.1
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.6e-12 76.6 117 37.6
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-12 76.3 213 32.9
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 3.7e-11 72.8 137 34.3
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.8e-10 70.5 119 34.5
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.4e-10 70.1 88 48.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.1e-10 69.3 87 46.0
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.7e-09 66.6 89 42.7
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.0e-08 64.7 39 71.8
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.3e-08 64.3 86 36.0
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.2e-08 63.5 88 42.0
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 3.6e-06 56.2 73 45.2


User provided reference genes

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