Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.1e-72 276.6 146 100.0
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.4e-70 269.6 146 97.3
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.4e-62 242.3 143 87.4
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.4e-59 233.0 144 84.7
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.2e-59 231.9 147 83.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.2e-59 231.9 147 83.7
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 4.2e-59 231.5 141 84.4
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.4e-59 231.1 147 83.0
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 2.1e-58 229.2 143 81.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.6e-58 228.0 144 82.6
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.0e-57 226.9 144 81.2
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 144 79.9
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.9e-57 224.9 144 80.6
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 6.7e-57 224.2 144 80.6
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 8.7e-57 223.8 143 79.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.1e-56 223.4 146 81.5
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 81.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.9e-56 222.6 145 82.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.5e-56 222.2 145 82.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.3e-56 221.5 145 82.1
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 4.3e-56 221.5 148 81.8
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 5.6e-56 221.1 142 81.0
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 7.4e-56 220.7 142 82.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 7.4e-56 220.7 142 82.4
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 9.6e-56 220.3 138 84.1
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 79.7
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.6e-55 219.5 142 81.0
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.1e-55 219.2 146 80.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.1e-55 219.2 146 80.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 2.1e-55 219.2 146 80.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 3.7e-55 218.4 139 79.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 6.2e-55 217.6 145 81.4
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 6.2e-55 217.6 141 82.3
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 6.2e-55 217.6 147 78.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 8.1e-55 217.2 139 80.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 8.1e-55 217.2 140 80.0
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 8.1e-55 217.2 148 78.4
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 8.1e-55 217.2 147 78.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.1e-54 216.9 147 77.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.1e-54 216.9 139 79.9
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.4e-54 216.5 143 78.3
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.4e-54 216.5 143 78.3
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.8e-54 216.1 138 81.2
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.4e-54 215.7 149 77.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.4e-54 215.7 149 77.2
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.4e-54 215.7 138 81.2
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.4e-54 215.7 147 77.6
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.1e-54 215.3 139 80.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 3.1e-54 215.3 138 79.0
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.0e-54 214.9 143 77.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 4.0e-54 214.9 139 79.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.0e-54 214.9 147 78.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.0e-54 214.9 138 80.4
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.0e-54 214.9 142 76.8
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 6.9e-54 214.2 142 80.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 9.0e-54 213.8 149 76.5
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.2e-53 213.4 140 81.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.2e-53 213.4 148 77.0
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-53 213.0 143 76.9
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.5e-53 213.0 140 79.3
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.5e-53 213.0 138 79.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.0e-53 212.6 146 76.0
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.0e-53 212.6 147 74.8
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.6e-53 212.2 144 77.8
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.6e-53 212.2 144 77.8
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 2.6e-53 212.2 143 76.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 3.4e-53 211.8 147 76.2
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.4e-53 211.8 145 77.9
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.4e-53 211.8 143 76.9
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.4e-53 211.8 146 76.0
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 4.5e-53 211.5 143 76.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 4.5e-53 211.5 140 79.3
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.8e-53 211.1 137 77.4
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.8e-53 211.1 143 76.9
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 5.8e-53 211.1 148 75.0
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 7.6e-53 210.7 141 77.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 9.9e-53 210.3 136 80.9
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.3e-52 209.9 139 77.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.7e-52 209.5 146 77.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.7e-52 209.5 133 82.0
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.2e-52 209.1 143 76.2
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.2e-52 209.1 143 76.2
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.2e-52 209.1 142 76.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.9e-52 208.8 139 76.3
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 3.8e-52 208.4 143 78.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 8.4e-52 207.2 148 75.0
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.1e-51 206.8 141 77.3
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.1e-51 206.8 142 76.8
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.4e-51 206.5 144 76.4
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.4e-51 206.5 148 75.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.9e-51 206.1 142 76.8
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.2e-51 204.9 148 75.7
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 7.1e-51 204.1 137 77.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.2e-50 203.4 137 76.6
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.6e-50 203.0 137 76.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.6e-50 203.0 139 75.5
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 4.6e-50 201.4 123 83.7
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 7.9e-50 200.7 139 74.1
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.0e-49 200.3 137 76.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.8e-49 199.5 140 73.6
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.3e-49 199.1 142 74.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 6.7e-49 197.6 137 74.5
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.7e-49 197.2 139 71.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 7.4e-48 194.1 141 70.2
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.3e-47 193.4 137 70.8
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.8e-47 192.2 143 69.2
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 138 69.6
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.4e-46 189.9 143 69.2
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.8e-46 189.5 141 68.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 3.1e-46 188.7 136 72.1
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.0e-46 188.3 138 68.8
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.0e-46 188.3 138 68.8
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 9.0e-46 187.2 142 66.9
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.6e-45 185.7 140 67.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.4e-45 185.3 139 66.9
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.5e-45 184.9 139 66.2
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 4.5e-45 184.9 140 66.4
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 7.6e-45 184.1 118 82.2
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 4.9e-44 181.4 141 66.7
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.5e-44 181.0 142 67.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.5e-44 181.0 142 67.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.5e-44 181.0 142 67.6
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.1e-43 180.3 143 66.4
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 7.1e-43 177.6 133 68.4
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 9.3e-43 177.2 142 65.5
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.2e-42 176.8 142 65.5
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.0e-41 173.7 114 79.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 8.7e-41 170.6 144 64.6
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 8.7e-41 170.6 144 64.6
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.3e-40 168.3 137 62.0
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.7e-40 167.9 135 65.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.2e-39 166.0 146 64.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.4e-38 163.3 142 59.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.0e-37 159.5 138 59.4
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.9e-35 152.9 145 58.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.4e-32 141.0 129 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.4e-30 136.0 107 60.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 6.9e-30 134.4 131 57.3
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.4e-29 132.1 130 56.2
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 7.4e-24 114.4 108 62.0
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 5.9e-21 104.8 84 63.1
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.7e-20 103.2 80 67.5
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.0e-20 101.7 136 41.2
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 4.2e-19 98.6 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 5.9e-13 78.2 86 47.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.7e-13 77.8 48 79.2


User provided reference genes

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