Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 0.0e+00 1488.4 742 100.0
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 2.7e-303 1045.0 705 72.6
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 4.7e-292 1007.7 713 70.3
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 6.2e-292 1007.3 689 72.7
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 2.2e-289 998.8 679 72.3
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.0e-286 988.4 707 69.4
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.1e-285 986.5 682 71.0
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.2e-284 983.0 687 70.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.2e-284 983.0 701 67.5
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 6.2e-284 980.7 716 68.3
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 6.4e-281 970.7 688 68.6
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.9e-280 969.1 654 71.3
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.6e-279 966.1 676 70.3
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 2.7e-279 965.3 702 67.2
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 2.7e-279 965.3 693 69.7
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 5.1e-278 961.1 673 68.9
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.5e-277 959.5 703 65.7
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.5e-277 958.7 745 65.0
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 3.3e-277 958.4 710 66.6
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 5.6e-277 957.6 682 68.6
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.6e-276 956.1 673 68.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.1e-276 955.7 670 69.6
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 4.7e-276 954.5 680 67.8
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 6.8e-275 950.7 688 67.9
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 8.9e-275 950.3 687 67.5
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 3.4e-274 948.3 673 68.2
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 4.4e-274 948.0 667 68.8
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.2e-273 945.7 680 68.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.2e-271 939.9 683 68.5
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.7e-271 938.7 667 68.4
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 4.6e-271 937.9 686 67.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.8e-267 926.0 686 65.7
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.0e-267 924.9 696 65.9
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 5.2e-267 924.5 717 64.0
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 7.6e-266 920.6 683 66.5
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 7.6e-266 920.6 737 62.4
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 9.9e-266 920.2 685 65.7
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.7e-265 919.5 672 67.0
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.2e-265 919.1 673 67.3
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.2e-265 919.1 708 65.1
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 6.4e-265 917.5 667 67.2
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 2.4e-264 915.6 684 65.1
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 5.4e-264 914.4 681 65.9
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 9.3e-264 913.7 684 65.1
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 9.3e-264 913.7 670 66.0
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.2e-263 913.3 670 65.5
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.6e-263 912.9 684 65.5
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 3.5e-263 911.8 684 66.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 4.6e-263 911.4 674 65.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 6.0e-263 911.0 718 63.8
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 7.8e-263 910.6 686 64.9
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.7e-262 909.4 688 65.1
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.7e-262 909.4 685 65.5
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 3.0e-262 908.7 685 64.8
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.6e-262 907.5 675 66.2
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 8.7e-262 907.1 664 66.9
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.5e-261 905.6 684 64.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.6e-261 904.4 714 62.5
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.1e-260 902.5 694 64.7
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 3.6e-260 901.7 673 64.6
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.6e-260 901.7 694 64.7
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 8.1e-260 900.6 681 64.6
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 8.1e-260 900.6 668 65.6
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.1e-259 900.2 668 65.6
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.8e-259 899.4 709 62.8
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.8e-259 899.4 709 62.6
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 3.1e-259 898.7 709 62.5
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.5e-258 896.3 702 64.1
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.6e-258 895.6 667 66.3
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.4e-258 895.2 727 62.2
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 3.2e-256 888.6 713 62.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 2.1e-255 885.9 718 62.4
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.7e-255 885.6 686 62.8
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 1.3e-254 883.2 691 63.1
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 6.9e-251 870.9 675 62.8
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 5.5e-248 861.3 651 65.1
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 9.3e-248 860.5 616 68.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.0e-241 840.5 668 62.6
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 6.5e-241 837.8 686 62.2
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 4.2e-240 835.1 667 63.0
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.0e-238 830.5 998 46.5
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.3e-238 829.3 669 60.2
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.1e-235 818.9 709 59.9
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 3.6e-231 805.4 706 57.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.4e-226 788.9 573 67.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 2.6e-221 772.7 618 63.4
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.5e-218 763.5 535 68.0
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 1.1e-213 747.3 687 56.8
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.0e-213 746.5 505 72.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 7.4e-213 744.6 633 60.2
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.1e-211 740.7 498 71.9
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 3.6e-207 725.7 519 68.2
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 6.1e-207 724.9 685 54.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 2.2e-196 689.9 579 59.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.8e-195 686.8 720 51.0
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.3e-185 654.1 640 53.6
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 4.3e-184 649.0 685 48.9
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.7e-172 610.5 678 47.6
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.2e-170 604.4 431 66.1
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 8.7e-145 518.5 362 69.3
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 8.7e-145 518.5 407 60.2
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.5e-138 496.5 393 61.6
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.7e-132 477.6 385 62.1
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.3e-128 463.4 518 45.4
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 2.5e-115 420.6 361 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.3e-112 409.8 445 47.0
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 5.9e-109 399.4 328 61.3
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.3e-104 383.6 334 57.5
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.2e-100 370.9 298 62.1
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 9.4e-99 365.5 277 66.4
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 2.4e-94 350.9 569 40.1
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.1e-90 337.8 243 70.0
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 7.5e-88 329.3 240 65.4
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.9e-84 317.4 353 48.7
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 9.8e-80 302.4 236 63.1
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.0e-76 292.4 283 55.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-69 266.9 385 38.2
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.6e-66 258.5 574 33.1
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-65 255.4 429 36.6
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 5.2e-57 226.9 579 29.7
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 3.4e-40 171.0 357 35.9
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 9.9e-40 169.5 115 71.3
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 4.2e-38 164.1 277 36.8
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.6e-36 156.8 121 62.8
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.8e-34 151.4 112 71.4
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 8.1e-34 149.8 216 40.3
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.5e-32 145.6 224 38.4
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 2.2e-31 141.7 103 68.9
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-30 139.4 221 38.5
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-25 122.5 84 64.3
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.4e-25 121.7 125 52.0
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.5e-21 107.8 74 64.9
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 6.2e-18 97.1 386 25.1
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.0e-16 92.0 266 28.9
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.4e-16 91.3 88 50.0
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.0e-15 89.7 433 24.2
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.2e-13 82.8 59 71.2
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.6e-13 82.4 64 60.9
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.0e-13 80.5 46 73.9
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.8e-12 79.0 53 62.3
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.3e-12 78.6 46 71.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 8.7e-12 76.6 149 41.6
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.5e-11 75.1 46 69.6
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 4.3e-11 74.3 68 54.4
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.7e-11 73.9 50 64.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 2.6e-08 65.1 60 60.0


User provided reference genes

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