Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 0.0e+00 1701.8 852 100.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.7e-253 879.8 852 59.6
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.3e-233 812.4 584 71.2
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.4e-233 812.0 584 71.2
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 4.5e-230 802.0 584 69.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 2.1e-227 793.1 595 69.1
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 2.1e-219 766.5 584 65.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 8.0e-219 764.6 584 65.6
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.0e-218 762.7 584 67.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.0e-218 762.3 584 65.4
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.0e-217 760.0 583 65.4
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 7.5e-217 758.1 588 66.3
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.8e-216 756.1 582 66.0
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.3e-213 747.3 585 64.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.7e-213 746.9 585 65.6
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.5e-209 733.8 587 63.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 7.5e-209 731.5 590 63.6
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.7e-208 729.2 583 62.6
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.9e-208 728.8 607 63.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 5.4e-207 725.3 586 63.0
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 5.9e-206 721.8 582 62.9
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.3e-205 719.9 579 63.4
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.8e-205 719.2 588 64.5
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 3.3e-204 716.1 620 59.7
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.6e-203 713.8 587 62.7
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.0e-202 711.1 590 62.2
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.8e-202 710.3 585 63.4
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.0e-202 709.5 584 62.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.0e-201 706.8 585 62.1
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.4e-201 705.7 587 62.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 7.5e-201 704.9 588 61.4
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.9e-200 703.0 583 61.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 3.2e-199 699.5 590 61.5
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.0e-198 696.8 588 61.4
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.3e-197 693.3 590 61.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 3.0e-197 693.0 591 60.4
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 6.6e-197 691.8 584 61.6
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.9e-196 690.3 579 60.3
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 4.3e-196 689.1 588 60.2
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 7.3e-196 688.3 591 60.1
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 6.2e-195 685.3 590 60.2
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.3e-194 683.3 587 60.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 6.8e-194 681.8 566 61.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 6.8e-194 681.8 587 61.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.0e-193 680.2 587 60.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 7.5e-193 678.3 584 60.1
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.9e-191 673.7 581 58.7
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.2e-191 672.9 589 59.6
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 7.8e-190 668.3 598 58.0
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.5e-188 664.1 594 59.9
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.5e-188 663.3 586 58.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 5.6e-188 662.1 590 59.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 9.5e-188 661.4 588 58.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 6.2e-187 658.7 588 57.8
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 8.1e-187 658.3 589 58.4
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.1e-187 658.3 654 54.4
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.1e-186 657.9 590 57.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.3e-186 656.8 590 57.6
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 4.0e-186 656.0 613 56.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 6.8e-186 655.2 541 61.6
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.3e-184 651.0 582 58.2
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.7e-184 650.6 582 57.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.7e-184 650.6 581 58.2
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.7e-184 650.6 583 57.8
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-183 646.4 581 57.0
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 7.1e-183 645.2 591 56.5
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 9.2e-183 644.8 587 56.7
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 9.2e-183 644.8 587 57.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.2e-182 644.4 587 56.7
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.6e-182 644.0 587 56.7
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.7e-182 643.3 582 55.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.0e-181 641.3 582 57.6
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-181 641.0 589 57.2
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.7e-181 640.6 590 57.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.3e-181 640.2 588 56.6
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 6.6e-181 638.6 587 55.9
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.1e-180 637.9 588 56.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.1e-180 637.9 588 56.5
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.9e-180 637.1 588 57.1
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.5e-180 636.7 588 55.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 3.3e-180 636.3 588 56.1
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.3e-180 636.3 588 56.1
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 7.3e-180 635.2 588 56.1
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 3.6e-179 632.9 588 56.0
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 4.7e-179 632.5 473 68.1
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 8.1e-179 631.7 593 55.5
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.4e-178 630.9 588 55.8
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.5e-177 627.5 591 55.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 7.6e-177 625.2 588 56.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.1e-175 619.4 588 55.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.0e-173 613.2 614 53.9
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.5e-172 610.9 472 62.7
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.0e-169 600.5 583 55.9
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.7e-168 597.4 851 43.0
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.9e-165 586.3 578 54.2
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 9.0e-162 575.1 590 51.5
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.7e-160 570.9 435 64.8
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.3e-157 561.2 574 53.3
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.1e-147 527.3 588 49.5
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 8.7e-141 505.4 497 52.9
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.4e-138 498.0 544 50.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-136 491.9 520 51.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.9e-134 482.3 603 46.1
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.9e-134 482.3 603 46.1
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.9e-134 482.3 603 46.1
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 6.5e-128 462.6 399 57.9
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.9e-125 453.4 591 44.7
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.4e-124 449.1 419 59.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 4.1e-122 443.4 450 52.4
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.2e-121 441.8 419 53.7
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 2.1e-118 431.0 617 42.3
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.0e-117 428.7 422 56.2
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.4e-114 418.3 607 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.2e-103 380.6 503 42.7
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.6e-102 377.1 570 38.9
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.1e-65 255.0 511 33.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 6.2e-62 243.4 428 34.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 8.9e-61 239.6 457 35.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 4.6e-57 227.3 286 47.2
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.1e-54 218.4 249 47.8
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.2e-53 213.8 130 80.0
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 6.9e-53 213.4 216 53.2
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 7.3e-47 193.4 176 55.1
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 3.6e-46 191.0 401 33.2
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 9.6e-39 166.4 154 52.6
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.5e-36 159.1 127 63.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 8.7e-32 143.3 102 68.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.4e-29 136.0 575 25.4
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.4e-29 136.0 171 45.6
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 4.0e-29 134.4 128 54.7
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.2e-25 122.9 150 44.7
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.1e-25 122.1 169 45.6
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.7e-25 121.7 95 66.3
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.5e-20 104.4 247 32.0
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.5e-19 100.1 123 46.3
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.4e-18 99.4 69 66.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 3.6e-17 94.7 71 63.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 4.6e-17 94.4 138 42.8
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.8e-16 92.4 85 57.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 3.9e-16 91.3 75 56.0
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.7e-14 85.9 92 46.7
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 6.5e-11 73.9 101 41.6
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.2e-09 69.7 53 64.2
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 7.9e-09 67.0 59 54.2
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-08 66.6 52 61.5
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.0e-08 66.6 57 54.4
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 8.8e-08 63.5 49 61.2
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 5.7e-07 60.8 46 65.2
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 1.7e-06 59.3 99 40.4
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.2e-06 58.9 37 67.6
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 3.7e-06 58.2 34 73.5
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.7e-06 58.2 35 68.6


User provided reference genes

Program Settings