Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023987 Daucus carota HOM05D002560 ORTHO05D017207 1.2e-49 199.5 97 100.0
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 2.5e-20 102.1 99 56.6
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 2.1e-19 99.0 96 58.3
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 4.8e-19 97.8 95 57.9
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.4e-18 96.3 97 53.6
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.9e-18 94.0 101 54.5
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 6.9e-18 94.0 105 50.5
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 6.9e-18 94.0 103 50.5
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 6.9e-18 94.0 91 54.9
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.5e-17 92.8 100 51.0
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.5e-17 92.8 100 52.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 1.5e-17 92.8 100 53.0
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.6e-17 92.0 103 52.4
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 2.6e-17 92.0 101 54.5
MELO3C027185.2 Cucumis melo HOM05D002560 ORTHO05D017207 2.6e-17 92.0 99 52.5
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 3.4e-17 91.7 95 56.8
Cpa.g.c37981 Carica papaya HOM05D002560 ORTHO05D017207 4.5e-17 91.3 99 54.5
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 4.5e-17 91.3 110 51.8
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.8e-17 90.9 99 54.5
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.0e-16 90.1 99 52.5
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.0e-16 90.1 111 50.5
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.3e-16 89.7 100 54.0
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 1.3e-16 89.7 99 50.5
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 1.3e-16 89.7 99 51.5
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.3e-16 89.7 104 50.0
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 1.7e-16 89.4 111 50.5
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 1.7e-16 89.4 98 50.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 2.2e-16 89.0 94 51.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 3.8e-16 88.2 102 50.0
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.8e-16 88.2 98 53.1
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.8e-16 88.2 99 47.5
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 4.9e-16 87.8 99 49.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 6.5e-16 87.4 94 50.0
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 6.5e-16 87.4 111 49.5
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 8.4e-16 87.0 96 53.1
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 8.4e-16 87.0 96 53.1
Actinidia32555 Actinidia chinensis HOM05D002560 ORTHO05D017207 1.4e-15 86.3 93 51.6
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.4e-15 86.3 96 54.2
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.4e-15 86.3 96 54.2
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.9e-15 85.9 99 50.5
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 1.9e-15 85.9 99 48.5
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 2.5e-15 85.5 112 45.5
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.2e-15 85.1 99 48.5
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.1e-15 84.0 95 48.4
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 9.3e-15 83.6 112 47.3
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 9.3e-15 83.6 96 50.0
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 9.3e-15 83.6 96 50.0
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 9.3e-15 83.6 102 49.0
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 2.1e-14 82.4 100 49.0
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-14 82.0 96 50.0
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-14 82.0 96 50.0
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-14 82.0 96 50.0
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.5e-14 81.6 93 50.5
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 3.5e-14 81.6 108 45.4
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 3.5e-14 81.6 105 46.7
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 4.6e-14 81.3 96 50.0
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 4.6e-14 81.3 106 46.2
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 7.9e-14 80.5 99 46.5
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.0e-13 80.1 52 67.3
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.0e-13 80.1 93 48.4
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.0e-13 80.1 108 47.2
vmacro20347 Vaccinium macrocarpon HOM05D002560 ORTHO05D017207 1.0e-13 80.1 101 46.5
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 1.3e-13 79.7 43 81.4
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.8e-13 79.3 106 46.2
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.8e-13 79.3 117 44.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 1.8e-13 79.3 92 52.2
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 1.8e-13 79.3 101 45.5
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.3e-13 79.0 112 44.6
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.0e-13 78.6 43 79.1
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 3.0e-13 78.6 73 56.2
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 3.0e-13 78.6 122 40.2
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.1e-13 77.8 119 42.0
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 5.1e-13 77.8 114 43.9
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 5.1e-13 77.8 108 46.3
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 5.1e-13 77.8 113 45.1
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.7e-13 77.4 108 46.3
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 6.7e-13 77.4 98 46.9
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 8.7e-13 77.0 51 66.7
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 8.7e-13 77.0 108 46.3
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 8.7e-13 77.0 43 76.7
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.5e-12 76.3 43 76.7
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.5e-12 76.3 109 44.0
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.5e-12 76.3 109 44.0
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.5e-12 76.3 103 47.6
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 1.9e-12 75.9 75 52.0
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 1.9e-12 75.9 114 42.1
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 1.9e-12 75.9 114 42.1
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 1.9e-12 75.9 50 70.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 1.9e-12 75.9 43 76.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.5e-12 75.5 50 68.0
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 2.5e-12 75.5 42 73.8
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 4.3e-12 74.7 99 46.5
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 4.3e-12 74.7 43 74.4
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 5.7e-12 74.3 109 42.2
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 7.4e-12 73.9 43 76.7
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 1.3e-11 73.2 117 41.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.3e-11 73.2 118 39.8
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.6e-11 72.8 117 40.2
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 2.2e-11 72.4 43 74.4
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 2.2e-11 72.4 43 74.4
Gohir.A11G330100 Gossypium hirsutum HOM05D002560 ORTHO05D017207 3.7e-11 71.6 109 41.3
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 3.7e-11 71.6 107 43.0
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 4.8e-11 71.2 98 46.9
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 6.3e-11 70.9 99 46.5
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 1.4e-10 69.7 115 38.3
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.8e-10 69.3 110 44.5
Oeu064890.1 Olea europaea HOM05D002560 ORTHO05D017207 4.1e-10 68.2 64 51.6
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 4.1e-10 68.2 74 48.6
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 4.1e-10 68.2 93 41.9
Phvul.008G088000 Phaseolus vulgaris HOM05D002560 ORTHO05D017207 9.0e-10 67.0 113 40.7
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.2e-09 66.6 102 41.2
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.2e-09 66.6 54 57.4
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.2e-09 66.6 105 40.0
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 2.6e-09 65.5 102 41.2
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 2.6e-09 65.5 50 62.0
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 3.4e-09 65.1 43 65.1
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 5.9e-09 64.3 101 41.6
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 7.6e-09 63.9 43 62.8
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 7.6e-09 63.9 43 62.8
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.0e-08 63.5 90 43.3
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.3e-08 63.2 42 64.3
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.2e-08 62.4 42 66.7
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 3.8e-08 61.6 109 39.4
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.0e-08 61.2 44 56.8
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 8.5e-08 60.5 95 41.1
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 8.5e-08 60.5 109 43.1
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.1e-07 60.1 106 38.7
PGSC0003DMG400011867 Solanum tuberosum HOM05D002560 ORTHO05D013255 3.2e-07 58.5 69 49.3
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 5.5e-07 57.8 106 40.6
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 7.2e-07 57.4 99 42.4
SGA_v2.0_scaffold204G41670 Striga asiatica HOM05D002560 ORTHO05D017207 1.2e-06 56.6 37 62.2
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 6.1e-06 54.3 33 69.7
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 6.1e-06 54.3 60 50.0


User provided reference genes

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