Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.3e-301 1038.1 525 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.2e-230 803.1 516 76.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 6.9e-221 770.8 516 71.9
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.2e-220 770.0 516 72.3
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.6e-220 767.3 516 73.1
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 7.1e-218 760.8 516 70.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.2e-217 760.0 518 72.4
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.1e-217 759.2 516 70.7
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.0e-216 756.9 537 68.9
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 6.6e-216 754.2 516 72.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.3e-214 750.0 516 71.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.8e-213 746.1 516 71.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.1e-213 745.3 514 70.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.0e-212 742.7 516 69.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.7e-209 732.3 512 70.1
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 7.9e-209 730.7 518 69.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.3e-208 729.9 516 68.2
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.9e-208 728.4 516 69.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.9e-207 726.1 516 68.4
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.5e-207 725.7 516 68.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.4e-207 724.2 516 68.6
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.3e-206 723.4 516 67.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.8e-206 722.2 516 68.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.4e-205 719.9 516 67.8
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.4e-205 719.9 542 67.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.8e-205 719.5 516 68.4
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.1e-205 718.8 516 68.0
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.1e-205 718.8 515 67.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.5e-204 714.9 516 67.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 4.5e-204 714.9 516 70.3
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.8e-204 714.5 516 67.8
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.9e-203 712.2 516 66.9
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 4.9e-203 711.4 516 66.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.9e-202 709.5 516 67.4
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-202 708.8 516 66.7
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.5e-202 708.0 515 67.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.9e-201 704.1 515 69.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.8e-200 703.0 512 68.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 3.9e-200 701.8 516 66.7
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 6.7e-200 701.0 518 65.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.1e-199 700.3 514 65.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.5e-199 699.1 516 67.2
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.3e-199 698.7 512 67.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.3e-198 696.8 512 67.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.6e-198 696.4 518 65.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.7e-198 695.3 516 65.5
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.1e-197 691.8 523 65.4
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.5e-196 689.9 520 66.3
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.0e-196 689.5 513 65.5
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.0e-195 687.2 517 64.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.3e-195 686.8 515 65.0
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.2e-195 686.0 572 62.2
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 6.5e-195 684.5 514 64.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.5e-195 684.5 505 66.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.5e-194 682.6 514 64.4
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 7.2e-194 681.0 516 65.7
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.6e-193 679.9 516 65.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.5e-193 678.7 516 65.9
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.3e-192 676.8 516 64.9
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-192 676.8 506 66.0
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 6.7e-192 674.5 711 51.3
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-191 673.3 520 64.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 9.7e-191 670.6 514 63.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.2e-190 669.5 514 61.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 3.7e-190 668.7 514 63.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.3e-189 664.8 516 62.4
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 5.3e-189 664.8 515 62.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 5.3e-189 664.8 516 64.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 6.9e-189 664.5 514 62.5
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 9.0e-189 664.1 516 61.6
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.2e-188 663.7 513 62.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.4e-188 662.1 495 65.7
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 5.9e-188 661.4 514 62.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 7.7e-188 661.0 514 62.1
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 7.7e-188 661.0 514 62.1
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-187 660.2 514 61.9
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.7e-187 659.8 514 61.9
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.2e-186 655.6 512 61.9
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 7.2e-186 654.4 515 61.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 9.4e-186 654.1 512 61.7
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.6e-185 651.7 546 57.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.0e-184 649.0 514 61.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.1e-183 647.1 525 61.0
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.8e-182 642.5 476 68.9
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.0e-179 634.0 518 61.2
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 5.5e-178 628.2 487 63.7
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.0e-176 622.5 539 60.3
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.3e-175 619.0 472 64.0
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.7e-171 606.7 517 58.2
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.7e-161 572.8 473 61.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.0e-160 568.9 514 56.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-156 557.4 353 76.8
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.6e-156 557.0 440 61.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.6e-156 557.0 516 54.3
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.0e-152 542.7 541 51.9
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.2e-150 536.6 507 53.8
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 3.7e-142 509.2 542 51.1
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.1e-120 436.4 514 44.6
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.2e-120 435.6 447 50.3
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 8.9e-120 434.9 506 44.9
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.2e-118 430.3 514 43.8
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 9.2e-117 424.9 332 64.2
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.9e-112 408.7 522 42.1
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 6.9e-112 408.7 304 66.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 9.0e-104 381.7 303 58.7
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.1e-82 311.6 214 72.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.4e-80 303.9 332 49.4
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 8.5e-78 295.4 214 70.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.9e-75 286.6 566 32.0
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.8e-73 280.4 374 37.4
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.8e-73 279.6 204 67.2
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.1e-68 262.7 207 62.8
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 5.7e-66 256.1 175 73.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.0e-62 245.4 264 45.1
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.5e-53 213.0 145 69.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.0e-46 189.9 110 81.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.4e-42 177.2 123 65.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.0e-36 156.0 122 65.6
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.2e-33 147.9 103 68.9
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.2e-27 126.7 94 58.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 6.8e-27 126.3 194 38.7
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.6e-26 124.4 85 70.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.3e-25 122.1 112 58.9
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.4e-25 119.8 72 76.4
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.4e-24 118.6 545 22.4
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.0e-22 110.9 377 26.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.0e-22 110.9 136 42.6
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.6e-20 104.0 131 46.6
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.3e-17 95.5 102 44.1
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-15 88.6 104 46.2
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.0e-15 88.2 79 54.4
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.7e-15 87.8 85 50.6
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.0e-14 85.9 82 51.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.0e-14 84.3 60 60.0
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.3e-13 80.9 86 47.7
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 4.7e-12 77.0 111 39.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 8.9e-11 72.8 58 65.5
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.5e-10 72.0 224 23.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.7e-09 68.6 53 54.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 3.7e-09 67.4 138 33.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 4.1e-08 63.9 62 48.4
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 7.8e-07 59.7 35 71.4


User provided reference genes

Program Settings