Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.8e-49 198.4 103 100.0
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-20 103.2 68 72.1
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.3e-19 99.8 67 68.7
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.3e-19 99.0 67 67.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 5.1e-19 97.8 67 61.2
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 6.6e-19 97.4 69 62.3
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 2.5e-18 95.5 63 65.1
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.3e-18 95.1 69 62.3
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.3e-18 95.1 67 64.2
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.3e-18 95.1 67 64.2
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.3e-18 94.7 63 65.1
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.3e-17 93.2 63 61.9
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.6e-17 92.8 75 56.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.1e-17 92.4 69 62.3
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.6e-17 91.7 76 53.9
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.8e-17 91.3 71 56.3
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.8e-17 91.3 75 57.3
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.1e-17 90.5 71 60.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.1e-17 90.5 77 55.8
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 8.1e-17 90.5 77 55.8
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.1e-17 90.5 63 61.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-16 90.1 67 62.7
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.1e-16 90.1 68 60.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-16 90.1 77 55.8
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.4e-16 89.7 77 59.7
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.4e-16 89.0 60 63.3
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.4e-16 89.0 71 57.7
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.3e-16 87.8 67 61.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.3e-16 87.8 71 59.2
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.3e-16 87.8 63 61.9
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 9.0e-16 87.0 63 61.9
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.5e-15 86.3 77 51.9
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 2.0e-15 85.9 77 54.5
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 9.9e-15 83.6 69 53.6
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 9.9e-15 83.6 60 61.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-14 82.4 60 60.0
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.2e-14 82.4 69 56.5
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 4.9e-14 81.3 58 60.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.4e-14 80.5 74 52.7
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-13 79.7 75 52.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 74 52.7
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.4e-13 79.0 70 52.9
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 2.4e-13 79.0 66 53.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.4e-13 79.0 68 54.4
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 3.2e-13 78.6 69 55.1
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 4.2e-13 78.2 71 49.3
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 4.2e-13 78.2 74 51.4
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 4.2e-13 78.2 67 49.3
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.4e-13 77.8 71 50.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.1e-13 77.4 77 50.6
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 7.1e-13 77.4 71 53.5
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 9.3e-13 77.0 62 58.1
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 9.3e-13 77.0 68 51.5
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.2e-12 76.6 75 46.7
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 2.1e-12 75.9 73 47.9
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.7e-12 75.5 71 47.9
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.7e-12 75.5 73 46.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.5e-12 75.1 72 48.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.5e-12 75.1 71 49.3
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 2.3e-11 72.4 67 46.3
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-11 72.4 69 49.3
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-11 72.4 69 49.3
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.3e-11 72.4 69 49.3
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.3e-11 72.4 71 49.3
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 5.1e-11 71.2 62 54.8
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 8.7e-11 70.5 79 44.3
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 1.1e-10 70.1 70 50.0
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-10 70.1 63 46.0
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-10 69.7 79 40.5
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.5e-10 69.7 63 47.6
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-10 68.6 79 39.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 3.3e-10 68.6 79 39.2
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 3.3e-10 68.6 76 48.7
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-10 68.2 71 45.1
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 71 45.1
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 4.3e-10 68.2 70 51.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 5.6e-10 67.8 77 40.3
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 5.6e-10 67.8 77 40.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 9.6e-10 67.0 71 43.7
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 9.6e-10 67.0 67 49.3
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 1.3e-09 66.6 77 48.1
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.6e-09 66.2 71 43.7
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 1.6e-09 66.2 78 46.2
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.6e-09 66.2 60 51.7
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-09 65.9 71 43.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.8e-09 65.5 62 53.2
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 3.6e-09 65.1 71 50.7
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.6e-09 65.1 63 42.9
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.8e-09 64.7 63 52.4
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 4.8e-09 64.7 76 40.8
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.1e-08 63.5 69 47.8
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-08 63.5 67 50.7
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 67 50.7
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 60 51.7
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.4e-08 63.2 69 46.4
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 3.1e-08 62.0 71 42.3
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 3.1e-08 62.0 62 50.0
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 3.1e-08 62.0 62 50.0
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.0e-08 61.6 62 50.0
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 4.0e-08 61.6 77 44.2
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 5.3e-08 61.2 87 34.5
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.3e-08 61.2 63 41.3
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 6.9e-08 60.8 62 50.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-08 60.8 62 50.0
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 6.9e-08 60.8 62 50.0
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.9e-08 60.8 71 45.1
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 9.0e-08 60.5 61 47.5
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-07 60.1 60 50.0
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-07 60.1 60 50.0
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 1.5e-07 59.7 67 47.8
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.5e-07 59.7 69 49.3
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.0e-07 59.3 71 43.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.6e-07 58.9 78 38.5
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.6e-07 58.9 62 48.4
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 3.4e-07 58.5 62 48.4
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 3.4e-07 58.5 62 46.8
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 4.5e-07 58.2 62 48.4
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 4.5e-07 58.2 62 48.4
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 5.8e-07 57.8 62 46.8
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 7.6e-07 57.4 58 43.1
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.6e-07 57.4 60 45.0
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.3e-06 56.6 58 41.4
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 1.3e-06 56.6 61 41.0
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-06 56.2 62 46.8
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 2.2e-06 55.8 62 46.8
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 2.9e-06 55.5 77 37.7
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 2.9e-06 55.5 58 39.7
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 2.9e-06 55.5 70 42.9
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.8e-06 55.1 58 39.7
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 3.8e-06 55.1 60 45.0
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.9e-06 54.7 61 44.3
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 6.4e-06 54.3 69 44.9
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 6.4e-06 54.3 69 44.9
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 8.4e-06 53.9 78 42.3
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 8.4e-06 53.9 56 42.9


User provided reference genes

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