Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 0.0e+00 1200.7 603 100.0
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 5.0e-199 698.4 653 56.4
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 7.2e-198 694.5 642 55.3
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 3.3e-195 685.6 614 57.2
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 3.3e-195 685.6 637 56.0
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 4.8e-194 681.8 614 57.3
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 8.2e-194 681.0 637 54.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.6e-192 676.0 618 56.6
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 3.5e-192 675.6 604 58.4
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 3.5e-192 675.6 638 55.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 5.9e-192 674.9 642 54.5
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 2.2e-191 672.9 642 54.4
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 2.9e-191 672.5 616 56.8
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 6.5e-191 671.4 606 55.9
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.7e-189 666.0 635 55.0
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 2.7e-189 666.0 612 56.2
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.7e-189 666.0 611 57.0
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.6e-189 665.6 636 55.0
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 3.6e-189 665.6 620 56.3
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 5.2e-188 661.8 618 56.1
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 5.2e-188 661.8 641 53.7
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 2.0e-187 659.8 604 56.5
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 2.6e-187 659.4 613 56.0
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 2.6e-187 659.4 645 53.6
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 4.4e-187 658.7 640 54.4
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 9.7e-187 657.5 618 56.0
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.3e-186 657.1 645 53.3
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.7e-186 655.6 634 53.3
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 3.1e-185 652.5 609 56.5
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.2e-184 650.6 605 56.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 5.0e-183 645.2 596 58.1
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.5e-183 644.8 645 53.6
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 6.5e-183 644.8 609 56.3
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.1e-182 644.0 640 53.9
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-182 644.0 640 53.9
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.5e-182 643.7 643 53.0
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-182 643.7 643 53.5
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 7.2e-182 641.3 535 60.7
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.2e-181 640.6 615 53.3
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.2e-181 640.6 648 51.4
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.7e-181 639.4 583 56.3
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 4.7e-181 638.6 445 69.2
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 4.7e-181 638.6 595 56.0
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.0e-180 637.5 637 52.6
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 3.0e-180 636.0 508 62.8
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.3e-178 630.6 600 56.2
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 3.7e-178 629.0 636 51.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.1e-177 627.5 612 52.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.1e-177 627.5 614 51.6
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.8e-177 626.7 515 59.0
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 4.1e-177 625.5 609 51.4
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 9.1e-177 624.4 626 52.6
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.0e-176 623.2 614 51.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 5.9e-176 621.7 625 52.2
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 5.9e-176 621.7 536 57.3
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.3e-175 620.5 631 53.4
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.7e-175 620.2 631 51.8
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 5.0e-175 618.6 616 53.1
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 6.5e-175 618.2 630 52.4
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.5e-174 616.3 611 53.2
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 7.2e-174 614.8 639 50.1
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 3.6e-173 612.5 629 51.2
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.4e-172 610.5 602 52.8
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.3e-172 609.8 628 51.1
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 8.8e-172 607.8 622 51.3
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.5e-171 607.1 517 59.6
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.0e-171 606.7 517 59.6
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 4.4e-171 605.5 622 51.0
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 5.7e-171 605.1 510 58.4
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 9.8e-171 604.4 524 59.0
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.8e-170 602.8 632 51.7
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.7e-170 602.4 550 57.5
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 8.3e-170 601.3 622 51.1
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.1e-169 600.9 622 51.1
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.1e-169 599.0 592 52.9
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.0e-167 594.3 609 53.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.9e-167 592.8 623 50.1
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 4.2e-166 589.0 506 59.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 2.1e-165 586.6 622 51.0
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 1.8e-164 583.6 527 56.2
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 5.2e-164 582.0 452 62.4
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.6e-163 579.7 521 58.5
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.0e-155 553.5 671 47.5
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.4e-154 548.5 525 54.7
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 4.1e-153 545.8 536 50.6
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.3e-150 536.2 517 54.9
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.1e-149 533.5 396 65.7
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.1e-149 533.5 396 65.7
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.8e-149 533.1 662 46.8
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 2.3e-143 513.5 395 63.3
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.5e-142 510.0 395 63.0
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 9.5e-142 508.1 619 46.4
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 8.1e-141 505.0 390 63.8
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 3.1e-140 503.1 408 60.8
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.5e-139 500.7 433 58.0
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 6.0e-136 488.8 526 48.3
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.3e-135 487.6 510 49.2
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 6.6e-135 485.3 448 56.7
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.9e-134 483.8 479 52.8
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.3e-130 471.1 392 58.2
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 8.7e-127 458.4 436 54.4
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 2.5e-126 456.8 400 57.2
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 7.3e-126 455.3 510 48.4
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 5.8e-123 445.7 342 61.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.3e-122 444.5 464 50.6
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 6.6e-119 432.2 464 48.1
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 2.5e-118 430.3 477 47.4
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.7e-114 417.5 464 47.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.8e-114 416.4 515 44.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 8.4e-114 415.2 458 48.5
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.1e-110 404.8 362 52.8
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 6.5e-106 389.0 264 69.7
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.4e-100 371.3 258 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 8.7e-95 352.1 498 39.2
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 7.4e-94 349.0 305 55.1
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.8e-92 344.4 521 41.1
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.1e-92 343.6 325 56.0
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.3e-85 319.3 389 44.2
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.4e-84 317.4 276 56.2
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.1e-73 282.0 522 34.7
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.2e-71 273.1 191 65.4
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.3e-55 221.1 159 64.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.1e-48 196.4 195 46.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.0e-42 179.1 132 61.4
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.2e-40 172.2 249 43.0
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.4e-36 157.9 251 40.2
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 3.2e-36 157.5 120 66.7
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.6e-32 145.2 119 62.2
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.0e-30 138.3 189 45.0
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.6e-30 137.9 129 51.9
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.2e-29 134.8 129 51.2
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-26 124.8 126 48.4
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.3e-25 120.6 216 36.6
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.3e-18 98.2 100 56.0
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 6.2e-16 90.1 98 49.0
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 3.2e-12 77.8 109 42.2
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.2e-12 77.4 136 37.5


User provided reference genes

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