Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 9.4e-30 134.0 68 100.0
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 2.4e-17 92.8 61 75.4
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.2e-16 90.5 59 74.6
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 2.6e-16 89.4 60 75.0
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 3.5e-16 89.0 67 68.7
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 3.5e-16 89.0 68 66.2
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.5e-16 89.0 68 66.2
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.5e-16 89.0 68 66.2
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.5e-16 88.6 68 66.2
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 5.9e-16 88.2 53 77.4
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.0e-15 87.4 60 71.7
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.3e-15 87.0 60 73.3
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 1.7e-15 86.7 63 68.3
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.7e-15 86.7 53 75.5
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 2.2e-15 86.3 58 70.7
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 2.2e-15 86.3 70 64.3
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 2.9e-15 85.9 56 75.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 2.9e-15 85.9 60 71.7
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.9e-15 85.9 59 69.5
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 3.8e-15 85.5 56 71.4
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.8e-15 85.5 60 70.0
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 5.0e-15 85.1 71 60.6
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 5.0e-15 85.1 51 80.4
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 6.5e-15 84.7 57 73.7
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 6.5e-15 84.7 57 73.7
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 8.5e-15 84.3 53 71.7
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 8.5e-15 84.3 60 71.7
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 8.5e-15 84.3 60 70.0
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 8.5e-15 84.3 60 70.0
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 1.1e-14 84.0 57 73.7
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.5e-14 83.6 58 70.7
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.9e-14 83.2 58 70.7
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 1.9e-14 83.2 57 73.7
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.9e-14 83.2 62 69.4
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 3.2e-14 82.4 70 57.1
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 3.2e-14 82.4 57 68.4
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.2e-14 82.4 60 68.3
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 4.2e-14 82.0 57 68.4
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 4.2e-14 82.0 57 68.4
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 4.2e-14 82.0 62 66.1
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 5.5e-14 81.6 69 65.2
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 7.2e-14 81.3 56 67.9
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 7.2e-14 81.3 52 75.0
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.2e-13 80.5 56 69.6
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 1.6e-13 80.1 69 59.4
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 1.6e-13 80.1 60 66.7
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 2.1e-13 79.7 54 72.2
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 2.1e-13 79.7 54 68.5
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 3.6e-13 79.0 70 62.9
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 6.1e-13 78.2 70 60.0
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 6.1e-13 78.2 51 72.5
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 6.1e-13 78.2 71 59.2
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 8.0e-13 77.8 56 62.5
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 8.0e-13 77.8 64 62.5
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 8.0e-13 77.8 53 69.8
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 2.3e-12 76.3 54 66.7
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.3e-12 76.3 52 73.1
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 2.3e-12 76.3 57 64.9
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 3.0e-12 75.9 64 60.9
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 3.0e-12 75.9 64 60.9
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 5.2e-12 75.1 53 69.8
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 6.7e-12 74.7 53 66.0
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 8.8e-12 74.3 51 70.6
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.2e-11 73.9 54 66.7
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.2e-11 73.9 57 66.7
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.5e-11 73.6 69 58.0
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.5e-11 73.6 60 63.3
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.5e-11 73.6 61 60.7
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 1.5e-11 73.6 55 61.8
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 2.0e-11 73.2 53 64.2
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 2.0e-11 73.2 55 61.8
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 2.0e-11 73.2 52 69.2
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 2.0e-11 73.2 56 60.7
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 2.6e-11 72.8 70 55.7
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 2.6e-11 72.8 61 63.9
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 5.7e-11 71.6 54 63.0
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 7.5e-11 71.2 64 60.9
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 7.5e-11 71.2 54 59.3
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 9.7e-11 70.9 46 73.9
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 9.7e-11 70.9 53 60.4
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 1.7e-10 70.1 56 64.3
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 2.2e-10 69.7 53 60.4
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.8e-10 68.6 55 58.2
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 4.8e-10 68.6 55 58.2
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 4.8e-10 68.6 55 58.2
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 4.8e-10 68.6 55 58.2
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 1.1e-09 67.4 50 66.0
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 3.1e-09 65.9 50 64.0
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 3.1e-09 65.9 48 64.6
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 7.0e-09 64.7 45 66.7
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 1.2e-08 63.9 58 55.2
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 2.0e-08 63.2 59 59.3
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 3.5e-08 62.4 58 55.2
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 1.3e-07 60.5 47 66.0
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 1.7e-07 60.1 45 66.7
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 2.2e-07 59.7 56 53.6
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.1e-06 57.4 39 64.1
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 1.5e-06 57.0 51 56.9
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 2.5e-06 56.2 54 51.9
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 7.2e-06 54.7 42 59.5
Lj1A285T18 Lonicera japonica HOM05D007144 ORTHO05D008709 9.4e-06 54.3 32 81.2


User provided reference genes

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