Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023811 Daucus carota HOM05D006445 ORTHO05D008030 8.9e-101 370.2 174 100.0
Hma1.2p1_1095F.1_g256580 Hydrangea macrophylla HOM05D006445 ORTHO05D008030 5.0e-27 125.2 99 61.6
Migut.G00392 Erythranthe guttata HOM05D006445 ORTHO05D008030 1.2e-25 120.6 99 57.6
Cpa.g.sc44.136 Carica papaya HOM05D006445 ORTHO05D008030 2.1e-25 119.8 111 54.1
Migut.G00407 Erythranthe guttata HOM05D006445 ORTHO05D008030 2.1e-25 119.8 99 58.6
Thhalv10020381m.g Eutrema salsugineum HOM05D006445 ORTHO05D008030 2.8e-25 119.4 88 60.2
Nn1g02503 Nelumbo nucifera HOM05D006445 ORTHO05D008030 3.6e-25 119.0 88 61.4
Sp3g20620 Schrenkiella parvula HOM05D006445 ORTHO05D008030 6.1e-25 118.2 88 59.1
Lsat_1_v5_gn_5_65540 Lactuca sativa HOM05D006445 ORTHO05D008030 1.0e-24 117.5 86 64.0
Nn3g19455 Nelumbo nucifera HOM05D006445 ORTHO05D008030 1.8e-24 116.7 99 57.6
Nitab4.5_0000321g0290 Nicotiana tabacum HOM05D006445 ORTHO05D008030 1.8e-24 116.7 86 64.0
Nitab4.5_0002446g0090 Nicotiana tabacum HOM05D006445 ORTHO05D008030 1.8e-24 116.7 86 64.0
DCAR_024183 Daucus carota HOM05D006445 ORTHO05D008030 2.3e-24 116.3 100 62.0
Potri.008G159500 Populus trichocarpa HOM05D006445 ORTHO05D008030 2.3e-24 116.3 85 61.2
Sabra08G0121600 Salix brachista HOM05D006445 ORTHO05D008030 3.0e-24 115.9 85 61.2
SEGI_38745 Sequoiadendron giganteum HOM05D006445 ORTHO05D008030 5.2e-24 115.2 87 58.6
arahy.Tifrunner.gnm1.ann1.G28WYQ Arachis hypogaea HOM05D006445 ORTHO05D008030 6.8e-24 114.8 86 59.3
ATR0665G293 Amborella trichopoda HOM05D006445 ORTHO05D008030 1.5e-23 113.6 85 61.2
AUR62039163 Chenopodium quinoa HOM05D006445 ORTHO05D008030 1.5e-23 113.6 84 61.9
Rhsim02G0031200 Rhododendron simsii HOM05D006445 ORTHO05D008030 1.5e-23 113.6 86 61.6
Atru.chr4.2321 Acer truncatum HOM05D006445 ORTHO05D008030 2.0e-23 113.2 85 62.4
Aa31LG8G9430 Aethionema arabicum HOM05D006445 ORTHO05D008030 2.0e-23 113.2 88 59.1
CAN.G231.21 Capsicum annuum HOM05D006445 ORTHO05D008030 2.6e-23 112.8 86 61.6
PGR004G1989 Punica granatum HOM05D006445 ORTHO05D008030 3.4e-23 112.5 84 61.9
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.4e-23 112.5 99 54.5
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.4e-23 112.5 99 54.5
MELO3C014278.2 Cucumis melo HOM05D006445 ORTHO05D008030 4.4e-23 112.1 86 59.3
CsaV3_2G013340 Cucumis sativus L. HOM05D006445 ORTHO05D008030 4.4e-23 112.1 86 59.3
BcaB04g20485 Brassica carinata HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
BcaC09g49223 Brassica carinata HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
A01p32190 Brassica napus HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
C01p41220 Brassica napus HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
BolC1t04076H Brassica oleracea HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
BraA01t03345Z Brassica rapa HOM05D006445 ORTHO05D008030 5.7e-23 111.7 88 56.8
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 5.7e-23 111.7 85 61.2
BcaB07g33591 Brassica carinata HOM05D006445 ORTHO05D008030 7.5e-23 111.3 87 57.5
Lj6A648T26 Lonicera japonica HOM05D006445 ORTHO05D008030 9.8e-23 110.9 113 54.0
Lj6C649T7 Lonicera japonica HOM05D006445 ORTHO05D008030 9.8e-23 110.9 101 57.4
TAR362G0995 Trochodendron aralioides HOM05D006445 ORTHO05D008030 9.8e-23 110.9 99 55.6
HPP92_007968 Vanilla planifolia HOM05D006445 ORTHO05D008030 9.8e-23 110.9 112 47.3
Actinidia08458 Actinidia chinensis HOM05D006445 ORTHO05D008030 1.3e-22 110.5 86 59.3
Ca_23527_v3 Cicer arietinum L. HOM05D006445 ORTHO05D008030 2.8e-22 109.4 85 57.6
AL5G37040 Arabidopsis lyrata HOM05D006445 ORTHO05D008030 3.7e-22 109.0 88 56.8
AT3G55760 Arabidopsis thaliana HOM05D006445 ORTHO05D008030 3.7e-22 109.0 88 56.8
Carub.0005s2255 Capsella rubella HOM05D006445 ORTHO05D008030 3.7e-22 109.0 88 56.8
Aqoxy5G00384 Aquilegia oxysepala HOM05D006445 ORTHO05D008030 6.3e-22 108.2 86 57.0
Manes.03G171500 Manihot esculenta HOM05D006445 ORTHO05D008030 6.3e-22 108.2 85 57.6
CANSAT78G1649 Cannabis sativa HOM05D006445 ORTHO05D008030 8.3e-22 107.8 86 54.7
GSVIVG01018073001 Vitis vinifera HOM05D006445 ORTHO05D008030 1.1e-21 107.5 85 58.8
Psat6g103160 Pisum sativum HOM05D006445 ORTHO05D008030 1.8e-21 106.7 86 54.7
Manes.15G034000 Manihot esculenta HOM05D006445 ORTHO05D008030 2.4e-21 106.3 85 56.5
vmacro15391 Vaccinium macrocarpon HOM05D006445 ORTHO05D008030 2.4e-21 106.3 86 58.1
Cfa008415 Carpinus fangiana HOM05D006445 ORTHO05D008030 4.1e-21 105.5 85 58.8
QL06p000554 Quercus lobata HOM05D006445 ORTHO05D008030 4.1e-21 105.5 85 57.6
MSTRG.4074 Avicennia marina HOM05D006445 ORTHO05D008030 7.0e-21 104.8 86 55.8
Lj6g0022017 Lotus japonicus HOM05D006445 ORTHO05D008030 9.2e-21 104.4 86 53.5
Actinidia18525 Actinidia chinensis HOM05D006445 ORTHO05D008030 1.2e-20 104.0 80 62.5
HanXRQChr12g0380371 Helianthus annuus HOM05D006445 ORTHO05D008030 1.2e-20 104.0 78 64.1
Thecc.04G241400 Theobroma cacao HOM05D006445 ORTHO05D008030 4.5e-20 102.1 86 54.7
VMungo0720G0393 Vigna mungo HOM05D006445 ORTHO05D008030 4.5e-20 102.1 81 56.8
Dinv14061 Davidia involucrata HOM05D006445 ORTHO05D008030 5.9e-20 101.7 75 62.7
DCAR_002362 Daucus carota HOM05D006445 ORTHO05D008030 1.0e-19 100.9 70 68.6
Phvul.007G279100 Phaseolus vulgaris HOM05D006445 ORTHO05D008030 1.0e-19 100.9 81 56.8
Sed0014630 Sechium edule HOM05D006445 ORTHO05D008030 1.3e-19 100.5 85 55.3
SMO351G0143 Selaginella moellendorffii HOM05D006445 ORTHO05D008030 1.7e-19 100.1 77 59.7
COL.COLO4_13180 Corchorus olitorius HOM05D006445 ORTHO05D008030 2.9e-19 99.4 86 55.8
CSS0014472 Camellia sinensis var. sinensis HOM05D006445 ORTHO05D008030 3.3e-18 95.9 72 63.9
Gohir.A09G220300 Gossypium hirsutum HOM05D006445 ORTHO05D008030 4.3e-18 95.5 86 54.7
TPR.G32777 Trifolium pratense HOM05D006445 ORTHO05D008030 4.3e-18 95.5 75 57.3
Eucgr.H03403 Eucalyptus grandis HOM05D006445 ORTHO05D008030 9.5e-18 94.4 80 56.2
SGA_v2.0_scaffold101G29748 Striga asiatica HOM05D006445 ORTHO05D008030 9.5e-18 94.4 99 49.5
DCAR_027254 Daucus carota HOM05D006445 ORTHO05D008030 1.2e-17 94.0 100 52.0
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 1.2e-17 94.0 72 62.5
Sed0027736 Sechium edule HOM05D006445 ORTHO05D008030 2.8e-17 92.8 73 58.9
CiPaw.01G193800 Carya illinoinensis HOM05D006445 ORTHO05D008030 4.7e-17 92.0 72 61.1
Peaxi162Scf00131g00510 Petunia axillaris HOM05D006445 ORTHO05D008030 4.7e-17 92.0 102 47.1
CARHR165870 Cardamine hirsuta HOM05D006445 ORTHO05D008030 1.0e-16 90.9 72 59.7
ClCG06G006550 Citrullus lanatus HOM05D006445 ORTHO05D008030 1.0e-16 90.9 72 58.3
Hund20068 Selenicereus undatus HOM05D006445 ORTHO05D008030 1.4e-16 90.5 72 59.7
Gohir.D09G222500 Gossypium hirsutum HOM05D006445 ORTHO05D008030 1.8e-16 90.1 72 61.1
Gorai.006G243700 Gossypium raimondii HOM05D006445 ORTHO05D008030 1.8e-16 90.1 72 61.1
Medtr1g041275 Medicago truncatula HOM05D006445 ORTHO05D008030 3.0e-16 89.4 72 56.9
EL10As20g24207 Beta vulgaris HOM05D006445 ORTHO05D008030 4.0e-16 89.0 72 58.3
Zm00001eb200610 Zea mays HOM05D006445 ORTHO05D008030 4.0e-16 89.0 46 80.4
Solyc06g053920.4 Solanum lycopersicum HOM05D006445 ORTHO05D008030 5.2e-16 88.6 68 63.2
PSO675G2091 Papaver somniferum HOM05D006445 ORTHO05D008030 8.9e-16 87.8 73 57.5
Oeu064236.1 Olea europaea HOM05D006445 ORTHO05D008030 1.2e-15 87.4 69 62.3
Sopen06g019080 Solanum pennellii HOM05D006445 ORTHO05D008030 3.4e-15 85.9 44 84.1
PGSC0003DMG400016314 Solanum tuberosum HOM05D006445 ORTHO05D008030 3.4e-15 85.9 44 84.1
TWI09G0629 Tripterygium wilfordii HOM05D006445 ORTHO05D008030 3.4e-15 85.9 69 59.4
Glyma.02G001900 Glycine max HOM05D006445 ORTHO05D008030 4.4e-15 85.5 72 54.2
SEGI_22971 Sequoiadendron giganteum HOM05D006445 ORTHO05D008030 4.4e-15 85.5 46 76.1
AagrBONN_evm.TU.Sc2ySwM_117.32 Anthoceros agrestis HOM05D006445 ORTHO05D008030 1.3e-14 84.0 51 68.6
PSO541G5254 Papaver somniferum HOM05D006445 ORTHO05D008030 1.7e-14 83.6 72 55.6
Duzib151G0014 Durio zibethinus HOM05D006445 ORTHO05D008030 2.9e-14 82.8 70 58.6
Sc15g0003230 Simmondsia chinensis HOM05D006445 ORTHO05D008030 2.9e-14 82.8 47 74.5
TAR549G0005 Trochodendron aralioides HOM05D006445 ORTHO05D008030 2.9e-14 82.8 73 53.4
MD16G1202300 Malus domestica HOM05D006445 ORTHO05D008030 6.4e-14 81.6 67 59.7
Lalb_Chr03g0037581 Lupinus albus HOM05D006445 ORTHO05D008030 8.3e-14 81.3 68 57.4
Haze_11252 Corylus avellana HOM05D006445 ORTHO05D008030 1.1e-13 80.9 70 57.1
Pp3c25_530 Physcomitrium patens HOM05D006445 ORTHO05D008030 1.1e-13 80.9 46 73.9
Duzib212G0108 Durio zibethinus HOM05D006445 ORTHO05D008030 1.4e-13 80.5 70 57.1
unitig_749.g14084 Utricularia gibba HOM05D006445 ORTHO05D008030 2.4e-13 79.7 73 53.4
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 4.1e-13 79.0 57 64.9
CDE10G0086 Ceratophyllum demersum HOM05D006445 ORTHO05D008030 5.4e-13 78.6 72 52.8
SalBow2G0732 Salvia bowleyana HOM05D006445 ORTHO05D008030 5.4e-13 78.6 44 77.3
Mapoly0053s0066 Marchantia polymorpha HOM05D006445 ORTHO05D008030 3.5e-12 75.9 67 53.7
RcHm_v2.0_Chr4g0388691 Rosa chinensis HOM05D006445 ORTHO05D008030 3.5e-12 75.9 42 76.2
RcHm_v2.0_Chr4g0388821 Rosa chinensis HOM05D006445 ORTHO05D008030 3.5e-12 75.9 42 76.2
Prupe.1G023800 Prunus persica HOM05D006445 ORTHO05D008030 6.0e-12 75.1 42 73.8
FvH4_4g01790 Fragaria vesca HOM05D006445 ORTHO05D008030 7.8e-12 74.7 42 76.2
FAN12G4074 Fragaria x ananassa HOM05D006445 ORTHO05D008030 7.8e-12 74.7 42 76.2
FAN17G0812 Fragaria x ananassa HOM05D006445 ORTHO05D008030 7.8e-12 74.7 42 76.2
FAN22G0464 Fragaria x ananassa HOM05D006445 ORTHO05D008030 7.8e-12 74.7 42 76.2
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 2.3e-08 63.2 89 37.1
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 2.3e-08 63.2 89 37.1
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.3e-08 63.2 90 35.6
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 3.1e-08 62.8 89 37.1
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 3.1e-08 62.8 89 37.1
MCO11G687 Micromonas commoda HOM05D004614 ORTHO05D005339 3.1e-08 62.8 42 61.9
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 4.0e-08 62.4 89 36.0
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 4.0e-08 62.4 89 36.0
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 6.8e-08 61.6 90 34.4
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 6.8e-08 61.6 89 36.0
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 6.8e-08 61.6 89 36.0
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 6.8e-08 61.6 89 36.0
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 1.2e-07 60.8 89 36.0
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 36.0
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 36.0
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 34.8
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 33.7
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 33.7
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 1.5e-07 60.5 89 33.7
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 3.4e-07 59.3 89 34.8
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 3.4e-07 59.3 89 36.0
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 3.4e-07 59.3 89 34.8
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 3.4e-07 59.3 90 33.3
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 5.8e-07 58.5 89 34.8
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 7.5e-07 58.2 89 32.6
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 7.5e-07 58.2 89 37.1
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 7.5e-07 58.2 89 33.7
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 7.5e-07 58.2 89 33.7
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.3e-06 57.4 87 35.6
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 1.3e-06 57.4 87 35.6
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.7e-06 57.0 87 34.5
MCO16G542 Micromonas commoda HOM05D004614 ORTHO05D005339 2.2e-06 56.6 89 36.0
Cre05.g248000 Chlamydomonas reinhardtii HOM05D004614 ORTHO05D005339 3.7e-06 55.8 87 32.2
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 3.7e-06 55.8 74 36.5
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 6.4e-06 55.1 89 31.5


User provided reference genes

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