Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1810.4 931 100.0
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1321.6 1007 67.4
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1300.0 1021 67.3
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1298.9 1006 65.8
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1297.0 1010 66.9
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1296.6 1009 65.9
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1290.8 1010 65.4
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1287.3 1008 66.3
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1285.4 1014 65.3
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1281.9 1008 66.6
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1271.5 1010 65.5
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1262.3 1011 64.0
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1262.3 1011 65.0
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1259.6 1008 65.3
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1255.7 1011 63.8
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1255.4 1006 64.4
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1252.3 1010 64.3
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1249.2 1016 63.2
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1248.8 1006 64.3
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1246.1 1006 64.3
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1240.3 1008 63.3
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1235.3 1010 63.0
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1234.9 1020 63.7
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1234.9 975 65.8
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1234.2 1010 63.8
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1231.1 1008 63.9
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1231.1 1031 62.0
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1227.2 1014 63.0
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1227.2 1050 61.7
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1224.9 1009 63.0
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1224.5 898 70.4
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1222.2 1013 62.0
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1222.2 1013 62.0
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1218.0 1009 62.5
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 1217.6 1114 58.5
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1216.4 1020 62.4
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1214.9 1013 62.5
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1214.1 1013 62.6
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1211.4 982 64.0
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 1206.4 1048 60.4
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1205.3 1023 60.3
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1203.7 1027 61.5
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1203.3 1009 61.8
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1200.3 967 63.4
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1199.9 1009 61.7
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1197.2 1011 61.4
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1192.2 1010 61.7
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1191.4 1007 62.7
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1187.9 1010 61.7
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1181.4 1031 60.8
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1175.2 1006 60.6
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1174.5 1010 60.3
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1173.3 1007 59.9
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1173.3 1010 59.6
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1169.8 1011 60.4
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1166.4 1004 61.5
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1162.5 1007 59.7
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1161.0 1011 59.4
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1157.5 1015 59.3
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1154.8 1011 59.8
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1150.2 1010 59.6
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1149.0 1010 60.1
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1147.9 1007 58.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1147.5 1007 59.7
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1144.8 1010 58.7
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1142.5 1009 59.6
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1140.6 1010 59.7
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1138.3 1010 58.8
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1135.6 1006 58.8
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1132.5 1008 59.6
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1130.9 1037 58.2
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1129.8 1050 57.3
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1119.8 1085 57.0
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1116.7 1039 57.9
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1110.1 1006 58.1
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1095.9 1008 58.0
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1090.5 1041 55.6
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1085.5 1009 57.3
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1083.6 1026 57.2
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1078.9 990 57.9
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 2.1e-305 1052.4 926 59.3
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 6.7e-304 1047.3 1023 55.2
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 2.6e-303 1045.4 1049 54.7
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 1.7e-302 1042.7 1030 55.8
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 5.7e-295 1017.7 894 60.1
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 7.5e-295 1017.3 897 58.8
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 1.6e-289 999.6 1013 52.7
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 6.4e-270 934.5 949 53.5
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 4.2e-245 852.0 1029 46.6
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 8.7e-235 817.8 738 59.6
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 2.1e-233 813.1 784 56.8
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 2.0e-223 780.0 696 59.3
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 2.5e-221 773.1 952 45.7
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 5.5e-221 771.9 617 63.5
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 2.7e-183 646.7 662 50.9
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 6.8e-179 632.1 1039 36.6
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 9.8e-178 628.2 1031 36.1
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 7.2e-173 612.1 580 56.6
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 7.5e-170 602.1 574 56.6
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 1.3e-169 601.3 623 53.1
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 3.7e-169 599.7 625 53.1
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 7.3e-149 532.3 393 64.6
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 2.8e-148 530.4 393 64.6
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 1.3e-129 468.4 1014 33.3
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 4.0e-107 393.7 396 54.3
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 1.1e-104 385.6 801 31.3
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 1.6e-103 381.7 991 31.6
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 5.5e-96 356.7 275 62.2
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 7.9e-95 352.8 402 48.8
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.1e-85 322.4 320 53.1
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 3.4e-82 310.8 212 71.7
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 4.5e-82 310.5 346 51.4
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 3.8e-81 307.4 857 26.7
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 5.3e-75 287.0 302 50.7
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 2.0e-66 258.5 448 37.5
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.1e-63 248.4 250 58.8
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.2e-50 206.1 140 70.7
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 8.9e-46 189.9 136 67.6
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 5.7e-45 187.2 142 65.5
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 4.1e-43 181.0 987 23.0
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.0e-41 174.9 192 50.0
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.4e-35 156.0 136 56.6
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 7.3e-32 143.7 119 58.8
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 2.2e-28 132.1 105 65.7
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 1.5e-24 119.4 83 78.3
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 3.1e-22 111.7 68 72.1
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 3.1e-22 111.7 112 48.2
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 7.6e-21 107.1 116 50.9
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 9.2e-19 100.1 73 60.3
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 1.0e-17 96.7 73 57.5
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 2.3e-17 95.5 138 40.6
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 3.9e-17 94.7 73 68.5
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 1.9e-16 92.4 68 67.6
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 5.6e-16 90.9 72 58.3
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 6.2e-15 87.4 77 61.0
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 3.1e-14 85.1 74 62.2
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 9.9e-13 80.1 129 38.0
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 6.4e-12 77.4 87 49.4
Lalb_Chr22g0359051 Lupinus albus HOM05D000846 ORTHO05D001340 6.4e-12 77.4 624 22.4
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 1.1e-11 76.6 155 36.1
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.2e-11 75.1 54 64.8
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 5.4e-11 74.3 106 40.6
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 5.4e-11 74.3 56 60.7
Lalb_Chr07g0186561 Lupinus albus HOM05D000846 ORTHO05D001340 4.6e-10 71.2 623 20.4
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 3.0e-09 68.6 38 78.9
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 6.6e-09 67.4 52 63.5
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 1.9e-08 65.9 38 76.3
Ca_05116_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 2.5e-08 65.5 44 70.5
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 6.2e-07 60.8 55 56.4
Lalb_Chr13g0295071 Lupinus albus HOM05D000846 ORTHO05D001340 6.2e-07 60.8 449 21.8
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 1.8e-06 59.3 36 72.2
Lalb_Chr12g0205231 Lupinus albus HOM05D000846 ORTHO05D001340 5.3e-06 57.8 448 21.7


User provided reference genes

Program Settings