Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 6.8e-148 527.3 269 100.0
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.6e-110 401.4 267 74.2
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.1e-109 399.4 267 73.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.1e-109 397.5 258 76.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.1e-108 397.1 264 73.5
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.8e-108 396.4 267 73.4
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.0e-108 395.2 267 74.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 6.9e-108 394.4 262 74.0
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.5e-107 393.3 259 74.5
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.5e-107 393.3 259 74.5
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-107 393.3 265 74.3
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.6e-107 392.5 266 74.1
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.6e-107 392.5 271 74.2
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 3.4e-107 392.1 274 72.3
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.8e-107 391.3 261 73.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.3e-106 390.2 270 72.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.3e-106 390.2 271 73.4
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 2.2e-106 389.4 267 73.0
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.4e-106 387.5 266 73.7
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.4e-105 386.7 265 72.5
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 4.2e-105 385.2 261 72.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.4e-105 384.8 271 72.3
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.1e-104 382.9 266 71.1
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.7e-104 382.5 268 70.9
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.7e-104 382.5 264 73.1
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.5e-104 382.1 267 70.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 6.0e-104 381.3 272 70.2
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 6.0e-104 381.3 272 70.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.0e-103 380.6 262 71.8
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.0e-103 380.6 273 71.8
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.3e-103 380.2 262 70.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.0e-103 379.0 263 71.1
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.9e-103 378.6 265 70.6
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 5.1e-103 378.3 270 69.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 8.7e-103 377.5 264 71.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.1e-102 377.1 262 69.5
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-102 377.1 272 69.9
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.5e-102 376.7 262 71.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.5e-102 376.7 282 70.6
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.9e-102 376.3 271 68.6
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.9e-102 376.3 295 66.8
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.5e-102 375.9 267 69.7
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 3.3e-102 375.6 270 70.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 3.3e-102 375.6 270 70.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 4.3e-102 375.2 267 68.9
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 4.3e-102 375.2 272 69.5
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 5.6e-102 374.8 268 69.0
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 7.3e-102 374.4 267 69.3
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.3e-102 374.4 266 69.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.3e-102 374.4 262 70.2
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 7.3e-102 374.4 257 71.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 9.6e-102 374.0 268 68.7
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 9.6e-102 374.0 266 67.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-101 373.6 264 68.9
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.6e-101 373.2 265 69.8
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.6e-101 373.2 266 70.3
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-101 372.9 270 67.8
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.1e-101 372.9 270 67.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.1e-101 372.9 270 67.8
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.8e-101 372.5 272 69.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.8e-101 372.5 272 69.9
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.6e-101 372.1 272 69.9
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.6e-101 372.1 291 66.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.8e-101 371.7 269 69.9
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.2e-101 371.3 248 74.2
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 8.1e-101 370.9 263 70.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-100 370.5 272 69.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.0e-100 368.6 273 66.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 4.0e-100 368.6 269 69.1
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.0e-100 368.6 269 68.4
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.3e-100 368.2 268 67.2
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.0e-100 367.5 273 67.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 9.0e-100 367.5 256 71.1
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.2e-99 367.1 270 68.9
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.5e-99 366.7 276 69.9
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.6e-99 365.9 271 67.5
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.5e-99 365.2 256 70.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.8e-99 364.8 258 70.9
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 9.9e-99 364.0 266 67.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 9.9e-99 364.0 270 68.5
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.2e-98 362.8 266 66.9
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.9e-98 361.7 255 69.8
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.4e-98 360.9 291 65.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 8.4e-98 360.9 271 70.5
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.4e-97 360.1 260 67.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.4e-97 360.1 265 69.8
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 7.1e-97 357.8 251 70.5
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.2e-96 357.1 281 65.8
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.2e-96 357.1 265 69.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.6e-96 356.7 249 71.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.6e-96 356.7 261 65.9
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.6e-96 356.7 261 66.3
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.5e-96 355.5 267 68.2
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 7.9e-96 354.4 282 67.4
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.3e-95 353.6 282 64.5
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.3e-95 353.6 245 71.8
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 2.3e-95 352.8 281 64.1
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.9e-95 352.1 235 71.9
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.7e-95 350.9 257 67.7
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.9e-94 349.7 247 70.0
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.9e-94 349.7 247 70.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.8e-93 345.9 270 67.8
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.8e-93 345.9 246 69.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.8e-91 338.2 221 72.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 7.6e-91 337.8 243 68.7
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.9e-90 335.1 256 65.2
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 4.9e-90 335.1 256 66.4
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 6.4e-90 334.7 255 68.6
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 7.1e-89 331.3 269 62.8
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.3e-89 330.9 278 61.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 9.3e-89 330.9 274 63.5
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.3e-86 322.4 268 62.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.6e-85 320.1 262 61.5
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 8.4e-82 307.8 268 61.2
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 9.3e-81 304.3 257 59.5
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.0e-80 301.6 246 63.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.6e-77 293.5 246 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.1e-76 290.8 258 56.6
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.9e-74 282.7 245 58.8
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.4e-73 280.4 265 55.5
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 3.2e-73 279.3 261 55.9
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.3e-69 267.3 254 53.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-69 266.9 261 51.3
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.6e-69 266.9 196 65.8
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.9e-68 261.5 179 72.6
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.7e-66 256.9 276 50.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.2e-64 250.8 176 70.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.3e-61 240.7 142 80.3
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-61 240.4 178 68.0
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.8e-60 236.9 213 56.3
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.5e-59 233.8 142 79.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.2e-58 229.9 142 78.9
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.7e-56 222.2 212 53.8
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.2e-53 211.5 182 62.1
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.5e-49 198.7 268 42.5
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 5.2e-47 192.2 114 83.3
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.3e-46 189.5 114 78.9
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.0e-43 180.3 129 69.0
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-40 171.0 150 60.0
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 2.7e-40 169.9 239 43.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.4e-38 162.5 97 78.4
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.1e-36 157.9 258 39.9
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.7e-34 150.6 255 38.0
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.0e-26 124.8 84 70.2
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 7.3e-25 118.6 116 55.2
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 9.5e-25 118.2 145 49.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 8.0e-24 115.2 82 68.3
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-22 110.9 86 65.1
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.9e-21 106.7 60 80.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.6e-19 100.9 184 33.2
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-19 99.4 72 66.7
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.9e-17 94.0 154 40.3
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 4.3e-17 92.8 93 51.6
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-15 88.2 62 69.4
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.1e-15 88.2 50 82.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 8.9e-15 85.1 284 27.1
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 2.0e-14 84.0 151 29.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 5.8e-14 82.4 167 31.1
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 7.5e-14 82.0 277 25.3
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 2.4e-12 77.0 142 28.2
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 3.6e-08 63.2 130 28.5
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 1.4e-07 61.2 118 41.5
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 9.9e-06 55.1 38 65.8
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 9.9e-06 55.1 38 65.8
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 9.9e-06 55.1 167 26.9


User provided reference genes

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