Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 4.9e-126 454.5 235 100.0
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.3e-102 376.7 221 86.4
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.3e-102 376.7 221 86.9
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 2.9e-102 375.6 221 85.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 6.4e-102 374.4 221 85.1
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 6.4e-102 374.4 221 85.1
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 8.4e-102 374.0 221 83.3
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.2e-101 371.7 221 83.7
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 5.4e-101 371.3 233 79.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.6e-100 369.8 221 84.2
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 2.1e-100 369.4 221 83.7
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.1e-100 369.4 221 86.0
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 3.5e-100 368.6 221 82.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 4.6e-100 368.2 221 84.2
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.6e-100 368.2 221 82.8
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.3e-99 366.7 221 82.8
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.3e-99 366.7 221 81.9
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.3e-99 366.7 221 82.8
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.3e-99 366.7 221 84.2
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 1.3e-99 366.7 221 84.6
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.7e-99 366.3 221 82.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.3e-99 365.9 221 81.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.9e-99 365.2 221 83.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 3.9e-99 365.2 221 84.6
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.7e-99 364.0 221 82.4
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 8.7e-99 364.0 221 81.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.1e-98 363.6 221 83.3
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.5e-98 363.2 221 82.8
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.5e-98 363.2 221 82.4
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 2.5e-98 362.5 221 81.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.3e-98 362.1 221 82.4
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.3e-98 361.7 220 81.8
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 4.3e-98 361.7 221 82.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 5.6e-98 361.3 221 81.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.6e-98 361.3 219 81.3
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 9.6e-98 360.5 221 80.5
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.3e-97 360.1 220 80.9
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.3e-97 360.1 221 82.8
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.3e-97 360.1 221 82.4
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.6e-97 359.8 221 82.4
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.6e-97 359.8 221 81.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.6e-97 359.8 228 79.4
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.6e-97 359.8 221 82.4
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 1.6e-97 359.8 215 84.2
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.6e-97 359.8 221 83.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 2.8e-97 359.0 221 82.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.8e-97 359.0 221 81.9
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 4.8e-97 358.2 221 81.4
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.1e-97 357.5 228 78.5
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.4e-96 356.7 221 80.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.8e-96 356.3 254 72.8
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.4e-96 355.9 221 81.9
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.1e-96 355.5 221 81.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.1e-96 355.5 221 81.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 3.1e-96 355.5 221 81.4
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.3e-96 354.8 221 79.6
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 6.9e-96 354.4 221 81.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 6.9e-96 354.4 220 80.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 9.0e-96 354.0 221 79.2
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.5e-95 353.2 221 80.1
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.0e-95 352.8 221 81.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.6e-95 352.4 221 79.6
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.6e-95 352.4 221 80.1
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.6e-95 352.4 221 79.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 3.4e-95 352.1 221 79.2
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 5.8e-95 351.3 221 79.2
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 5.8e-95 351.3 221 80.1
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 7.6e-95 350.9 221 79.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 9.9e-95 350.5 221 80.1
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.2e-94 349.4 221 80.1
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 2.9e-94 349.0 221 79.6
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 3.8e-94 348.6 221 79.2
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 6.4e-94 347.8 221 80.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-93 347.1 246 72.4
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.4e-93 346.7 221 78.3
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.4e-93 346.7 221 79.6
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.4e-93 345.9 255 72.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.4e-93 345.9 221 77.4
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.2e-93 345.5 221 78.7
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.2e-93 345.5 221 77.4
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.1e-92 342.8 221 79.2
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.7e-92 342.4 249 71.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.5e-92 342.0 221 79.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.0e-91 340.5 221 78.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.3e-91 339.3 221 78.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.3e-91 339.3 221 78.7
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 8.7e-91 337.4 219 76.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.1e-89 332.8 221 73.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 5.3e-88 328.2 220 73.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.5e-87 326.6 221 73.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.2e-86 322.8 221 75.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.6e-84 316.6 221 70.6
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.1e-82 310.5 184 83.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.8e-80 303.1 188 81.4
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.5e-79 300.1 221 69.7
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 2.9e-78 295.8 221 72.4
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.2e-77 292.4 220 65.0
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 9.3e-77 290.8 221 67.0
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.3e-75 286.2 275 58.5
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.9e-75 285.4 221 69.7
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 9.0e-72 274.2 162 85.2
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.5e-71 273.5 161 85.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.0e-70 268.5 202 65.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.2e-69 265.8 170 80.0
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 3.2e-69 265.8 222 60.8
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.6e-65 253.4 221 64.3
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.5e-63 245.4 151 80.1
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.1e-56 222.6 221 53.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 6.5e-54 214.9 142 73.9
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 8.5e-54 214.5 231 50.2
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.1e-53 214.2 209 53.6
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 5.5e-53 211.8 138 76.1
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 1.2e-52 210.7 139 79.1
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 8.2e-49 198.0 166 60.2
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.3e-46 190.7 152 63.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.3e-46 190.7 144 65.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.2e-39 167.5 237 44.7
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.8e-34 147.9 83 89.2
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.2e-31 141.0 239 39.7
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.9e-30 136.3 85 74.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.0e-27 127.9 81 76.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.4e-24 117.5 199 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-21 106.7 84 61.9
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.5e-21 106.7 108 56.5
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.6e-21 105.5 222 31.5
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.2e-17 93.6 54 79.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.2e-17 93.6 68 69.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.8e-16 90.5 113 44.2
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 3.2e-16 89.7 60 70.0
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 7.0e-16 88.6 70 64.3
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.6e-15 87.4 62 71.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.7e-15 86.7 55 72.7
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.0e-14 84.7 61 70.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 3.0e-14 83.2 164 36.6
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 7.3e-13 78.6 43 83.7
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 5.0e-06 55.8 34 76.5


User provided reference genes

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