Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.5e-72 275.4 145 100.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.4e-53 211.5 132 83.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.7e-52 209.5 116 92.2
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.2e-52 209.1 132 82.6
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 6.4e-52 207.6 132 83.3
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.2e-51 205.3 124 84.7
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 4.1e-51 204.9 127 81.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 7.1e-51 204.1 116 87.9
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.2e-50 203.4 132 81.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.2e-50 203.4 132 81.1
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.2e-50 203.4 133 81.2
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.1e-50 202.6 130 77.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.1e-50 202.6 120 85.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.7e-50 202.2 131 80.9
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.5e-50 201.8 143 72.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.6e-50 201.4 115 87.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.6e-50 201.4 127 81.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.0e-50 201.1 129 77.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.0e-50 201.1 129 78.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 6.0e-50 201.1 116 88.8
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.0e-50 201.1 120 85.0
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 6.0e-50 201.1 129 78.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 7.8e-50 200.7 129 82.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.8e-50 200.7 129 77.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 7.8e-50 200.7 121 83.5
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 7.8e-50 200.7 121 83.5
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.0e-49 200.3 133 78.9
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.0e-49 200.3 131 80.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.3e-49 199.9 121 83.5
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.3e-49 199.9 131 77.9
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-49 199.9 129 80.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-49 199.9 129 80.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-49 199.9 123 81.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.7e-49 199.5 129 80.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 3.0e-49 198.7 121 82.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 3.9e-49 198.4 132 79.5
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 3.9e-49 198.4 116 86.2
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 8.7e-49 197.2 115 85.2
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.1e-48 196.8 115 85.2
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.5e-48 196.4 114 87.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.9e-48 196.1 132 80.3
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.9e-48 196.1 132 77.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.9e-48 196.1 114 86.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.9e-48 196.1 114 86.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.5e-48 195.7 122 81.1
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.5e-48 195.7 129 76.0
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.5e-48 195.7 122 81.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.5e-48 195.7 132 75.8
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.3e-48 195.3 128 76.6
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.3e-48 195.3 129 76.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 3.3e-48 195.3 131 77.9
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.6e-48 194.5 120 82.5
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.6e-48 194.5 120 82.5
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 5.6e-48 194.5 120 82.5
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 5.6e-48 194.5 115 83.5
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.6e-48 194.5 141 72.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 7.3e-48 194.1 111 88.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.2e-47 193.4 120 80.0
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.2e-47 193.4 120 80.0
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.1e-47 192.6 120 80.0
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.1e-47 192.6 115 81.7
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.1e-47 192.6 115 81.7
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 2.1e-47 192.6 127 78.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-47 192.6 132 77.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-47 192.2 127 78.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.8e-47 192.2 124 79.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.8e-47 192.2 132 75.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.6e-47 191.8 128 76.6
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 3.6e-47 191.8 121 80.2
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.6e-47 191.8 132 77.3
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.7e-47 191.4 120 79.2
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 4.7e-47 191.4 120 79.2
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.7e-47 191.4 124 79.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 4.7e-47 191.4 120 80.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 4.7e-47 191.4 129 75.2
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 6.2e-47 191.0 115 84.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-47 191.0 122 80.3
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-47 191.0 122 80.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 8.1e-47 190.7 122 77.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 8.1e-47 190.7 124 78.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.1e-46 190.3 115 82.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.1e-46 190.3 120 78.3
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-46 190.3 127 76.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.4e-46 189.9 120 80.8
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-46 189.9 122 80.3
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-46 189.5 122 80.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.1e-46 188.7 132 73.5
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-46 188.3 122 79.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 6.9e-46 187.6 120 77.5
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 6.9e-46 187.6 120 77.5
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 6.9e-46 187.6 122 77.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-45 186.8 114 82.5
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.5e-45 186.4 120 80.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-45 186.4 115 82.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-45 186.4 122 78.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-45 186.0 123 75.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.0e-45 186.0 122 76.2
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-45 185.7 122 77.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-45 185.3 123 75.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-45 185.3 123 75.6
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-45 185.3 122 77.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.4e-45 184.9 114 82.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.8e-45 184.5 114 79.8
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.8e-45 184.5 123 75.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 7.6e-45 184.1 164 64.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.9e-44 181.4 120 77.5
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 6.4e-44 181.0 120 76.7
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 8.4e-44 180.6 135 72.6
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 8.4e-44 180.6 138 70.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-43 180.3 122 75.4
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.1e-43 180.3 120 76.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-43 180.3 122 76.2
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 2.4e-43 179.1 172 58.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.4e-43 179.1 121 76.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 3.2e-43 178.7 135 71.1
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 9.3e-43 177.2 120 75.0
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.7e-42 175.6 115 74.8
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.7e-42 175.6 115 74.8
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.9e-40 169.5 126 69.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.6e-40 167.9 123 70.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-39 165.6 123 69.1
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.8e-39 165.6 162 59.3
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-38 163.3 123 69.1
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.4e-38 162.5 121 65.3
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.4e-37 158.7 115 72.2
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 7.6e-37 157.5 102 82.4
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.9e-37 157.1 108 76.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 8.4e-36 154.1 121 69.4
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.4e-35 152.5 132 59.1
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 3.2e-35 152.1 121 58.7
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.2e-34 150.2 121 63.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 6.0e-34 147.9 115 61.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.0e-33 147.1 87 85.1
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.8e-30 136.3 88 83.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.4e-30 136.0 200 42.5
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.6e-26 123.2 70 87.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.9e-26 120.9 77 81.8
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 7.9e-26 120.9 78 82.1
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 7.9e-26 120.9 78 82.1
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-25 118.6 78 80.8
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 4.8e-23 111.7 115 47.0
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.8e-23 111.7 64 87.5
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.4e-22 110.2 114 46.5
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.1e-22 109.0 67 73.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-21 106.7 72 79.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.2e-19 99.0 65 72.3
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.2e-19 99.0 59 78.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-16 90.5 65 67.7
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.6e-15 86.7 51 76.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-14 83.6 66 68.2
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.4e-14 82.8 105 39.0
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.3e-14 81.6 62 69.4
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.4e-13 79.0 62 67.7
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.4e-11 73.6 108 33.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.1e-10 69.7 47 68.1
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 67.4 54 64.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-09 67.4 54 64.8
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.3e-08 62.0 52 61.5


User provided reference genes

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