Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 4.6e-149 531.2 265 100.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.2e-101 373.6 262 71.4
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.6e-96 356.7 236 73.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.7e-96 354.4 242 73.1
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.0e-95 354.0 235 71.9
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.0e-95 354.0 229 73.4
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.3e-95 353.6 235 73.6
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.8e-95 352.1 232 73.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.6e-95 350.9 232 73.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-94 350.5 240 71.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.5e-94 350.1 241 71.0
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.9e-94 349.7 248 68.1
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.5e-94 349.4 219 77.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 7.2e-94 347.8 216 75.0
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.5e-94 347.4 240 71.7
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.5e-94 347.4 240 71.7
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 9.5e-94 347.4 234 73.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.2e-93 347.1 242 71.9
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.2e-93 347.1 253 68.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.1e-93 346.3 232 72.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.6e-93 345.5 242 71.5
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.0e-93 344.4 215 76.3
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.0e-92 344.0 242 71.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.0e-92 344.0 242 71.9
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.0e-92 344.0 212 76.9
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.0e-92 344.0 241 70.1
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.0e-92 344.0 232 71.6
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.4e-92 343.6 223 73.5
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.8e-92 343.2 218 75.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.3e-92 342.8 235 70.2
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.0e-92 342.4 232 70.7
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 6.8e-92 341.3 216 74.1
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.0e-91 339.7 262 66.4
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 2.6e-91 339.3 218 73.4
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.4e-91 339.0 235 68.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.4e-91 338.6 223 74.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 5.7e-91 338.2 213 75.6
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 5.7e-91 338.2 224 73.2
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 9.8e-91 337.4 230 71.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 9.8e-91 337.4 216 73.1
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.3e-90 337.0 236 69.5
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-90 336.7 262 65.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 2.8e-90 335.9 221 71.0
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 6.3e-90 334.7 220 73.6
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 6.3e-90 334.7 221 71.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 8.3e-90 334.3 225 72.0
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 8.3e-90 334.3 223 71.3
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 206 77.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 219 73.1
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.4e-89 333.6 206 76.2
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.4e-89 333.6 223 74.0
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.4e-89 333.6 223 73.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.8e-89 333.2 220 74.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.4e-89 332.8 216 73.6
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 2.4e-89 332.8 210 75.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.4e-89 332.8 221 71.5
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 4.1e-89 332.0 211 73.5
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 5.4e-89 331.6 244 66.4
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 7.0e-89 331.3 222 70.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 7.0e-89 331.3 222 71.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.7e-88 329.3 235 68.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.5e-88 328.9 215 73.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 3.5e-88 328.9 223 68.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 4.5e-88 328.6 221 69.7
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 4.5e-88 328.6 209 73.7
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 5.9e-88 328.2 222 71.2
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.0e-87 327.4 246 66.3
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.3e-87 327.0 204 75.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.3e-87 327.0 215 72.1
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.7e-87 326.6 223 69.5
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.7e-87 326.6 229 67.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.7e-87 326.6 228 68.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.3e-87 326.2 248 63.7
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 2.3e-87 326.2 217 69.6
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.9e-87 325.9 216 72.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 3.9e-87 325.5 249 65.9
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.9e-87 325.5 249 65.1
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.9e-87 325.5 204 74.5
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 3.9e-87 325.5 222 72.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.0e-87 325.1 249 65.1
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 5.0e-87 325.1 218 70.2
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.1e-86 323.9 206 74.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.9e-86 323.2 211 74.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.9e-86 323.2 222 70.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.5e-86 322.8 259 62.9
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.3e-86 322.4 221 69.2
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 3.3e-86 322.4 225 66.7
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.3e-86 322.0 216 69.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 3.6e-85 318.9 246 65.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.7e-85 318.5 223 68.2
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.0e-85 317.8 227 70.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 8.0e-85 317.8 222 69.8
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 4.0e-84 315.5 204 76.0
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.2e-83 313.9 226 69.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.5e-83 313.5 204 74.0
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.6e-83 312.8 209 73.2
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 3.4e-83 312.4 209 72.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.4e-83 312.0 210 71.0
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.5e-83 311.2 234 66.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 7.5e-83 311.2 220 66.4
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.7e-82 310.1 202 72.3
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.7e-82 310.1 234 66.2
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.2e-82 309.7 207 72.0
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.0e-79 300.8 237 60.8
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.3e-79 299.7 185 76.2
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.2e-75 287.3 195 69.7
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 4.4e-75 285.4 224 63.4
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 6.4e-74 281.6 210 63.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.4e-73 280.4 226 59.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 4.1e-73 278.9 201 66.2
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.2e-72 277.3 209 63.2
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.9e-71 272.3 232 60.3
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.6e-67 259.6 208 58.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.3e-66 257.3 208 59.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.0e-63 247.7 171 70.2
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.2e-60 235.3 211 54.5
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.2e-59 234.2 220 55.9
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.8e-59 231.9 181 64.6
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 3.8e-58 229.2 246 48.0
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.4e-57 227.3 209 51.7
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 2.5e-54 216.5 145 74.5
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.6e-53 213.8 271 41.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.5e-51 207.2 212 50.5
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.7e-50 203.8 119 77.3
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.9e-50 203.0 186 57.5
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.3e-47 193.4 134 71.6
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 5.3e-44 182.2 240 37.1
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 6.0e-40 168.7 109 73.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.6e-37 160.6 212 41.0
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.3e-34 151.0 91 81.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.7e-30 135.6 130 56.2
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.7e-29 132.9 88 72.7
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.1e-28 129.8 107 63.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 4.8e-21 105.9 88 60.2
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 3.1e-20 103.2 110 45.5
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 3.2e-17 93.2 79 64.6
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 9.1e-12 75.1 85 51.8
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 6.5e-10 68.9 251 29.5
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.2e-09 66.2 44 70.5
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 3.9e-07 59.7 60 55.0


User provided reference genes

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