Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023419 Daucus carota HOM05D002165 ORTHO05D001531 3.3e-33 144.4 71 100.0
DCAR_026927 Daucus carota HOM05D002165 ORTHO05D001531 2.6e-22 108.2 70 77.1
DCAR_002558 Daucus carota HOM05D002165 ORTHO05D001531 6.2e-16 87.0 67 64.2
Sc25g0001810 Simmondsia chinensis HOM05D002165 ORTHO05D001531 7.1e-12 73.6 68 52.9
AUR62023661 Chenopodium quinoa HOM05D002165 ORTHO05D001531 1.6e-11 72.4 69 60.9
AUR62002532 Chenopodium quinoa HOM05D002165 ORTHO05D001531 3.5e-11 71.2 69 59.4
EL10Ac3g06229 Beta vulgaris HOM05D002165 ORTHO05D001531 3.9e-10 67.8 66 50.0
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 6.6e-10 67.0 66 53.0
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 6.6e-10 67.0 69 55.1
Cpa.g.sc146.6 Carica papaya HOM05D002165 ORTHO05D001531 2.5e-09 65.1 70 52.9
Phvul.009G221300 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 3.3e-09 64.7 69 50.7
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 5.6e-09 63.9 70 54.3
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 5.6e-09 63.9 70 54.3
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 5.6e-09 63.9 70 54.3
RcHm_v2.0_Chr4g0427981 Rosa chinensis HOM05D002165 ORTHO05D001531 5.6e-09 63.9 67 52.2
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 7.3e-09 63.5 70 54.3
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 1.2e-08 62.8 72 51.4
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.6e-08 62.4 70 52.9
Phvul.009G221200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.6e-08 62.4 60 55.0
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 2.1e-08 62.0 70 52.9
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 2.1e-08 62.0 70 52.9
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 2.1e-08 62.0 70 52.9
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 2.1e-08 62.0 66 51.5
FvH4_4g21750 Fragaria vesca HOM05D002165 ORTHO05D001531 2.8e-08 61.6 64 53.1
FAN07G0342 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.8e-08 61.6 64 53.1
FAN12G3878 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.8e-08 61.6 64 53.1
FAN17G1996 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.8e-08 61.6 64 53.1
Lalb_Chr11g0073691 Lupinus albus HOM05D002165 ORTHO05D001531 2.8e-08 61.6 62 54.8
Lalb_Chr11g0073701 Lupinus albus HOM05D002165 ORTHO05D001531 2.8e-08 61.6 62 53.2
Glyma.09G080700 Glycine max HOM05D002165 ORTHO05D001531 3.6e-08 61.2 70 50.0
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 3.6e-08 61.2 70 50.0
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 6.2e-08 60.5 69 46.4
Psat1g016840 Pisum sativum HOM05D002165 ORTHO05D001531 6.2e-08 60.5 66 48.5
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 8.1e-08 60.1 70 51.4
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 8.1e-08 60.1 70 51.4
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 8.1e-08 60.1 70 51.4
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 8.1e-08 60.1 70 51.4
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 8.1e-08 60.1 70 51.4
Medtr2g044970 Medicago truncatula HOM05D002165 ORTHO05D001531 8.1e-08 60.1 69 46.4
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-07 59.7 70 50.0
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 1.1e-07 59.7 73 49.3
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 1.1e-07 59.7 55 52.7
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.4e-07 59.3 72 51.4
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 1.4e-07 59.3 72 51.4
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 1.4e-07 59.3 70 45.7
Lalb_Chr08g0232971 Lupinus albus HOM05D002165 ORTHO05D001531 1.4e-07 59.3 64 48.4
QL06p014681 Quercus lobata HOM05D002165 ORTHO05D001531 1.4e-07 59.3 69 46.4
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.4e-07 59.3 72 45.8
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.4e-07 59.3 72 45.8
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.4e-07 59.3 72 45.8
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.8e-07 58.9 71 47.9
Lalb_Chr12g0200511 Lupinus albus HOM05D002165 ORTHO05D001531 1.8e-07 58.9 69 46.4
Lalb_Chr11g0073711 Lupinus albus HOM05D002165 ORTHO05D001531 2.4e-07 58.5 61 54.1
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 2.4e-07 58.5 42 61.9
Lalb_Chr11g0073741 Lupinus albus HOM05D002165 ORTHO05D001531 3.1e-07 58.2 62 53.2
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 3.1e-07 58.2 71 47.9
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.0e-07 57.8 43 62.8
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 5.2e-07 57.4 68 42.6
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 6.8e-07 57.0 71 49.3
Psat1g017000 Pisum sativum HOM05D002165 ORTHO05D001531 6.8e-07 57.0 62 48.4
Ca_21362_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 8.9e-07 56.6 70 48.6
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.2e-06 56.2 74 48.6
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 1.5e-06 55.8 73 46.6
Nn4g25284 Nelumbo nucifera HOM05D002165 ORTHO05D001531 1.5e-06 55.8 66 50.0
Ca_02322_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 2.0e-06 55.5 70 45.7
Ca_30364_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 2.0e-06 55.5 70 45.7
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 2.0e-06 55.5 73 45.2
TPR.G29438 Trifolium pratense HOM05D002165 ORTHO05D001531 2.0e-06 55.5 69 43.5
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 2.6e-06 55.1 43 62.8
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.6e-06 55.1 43 60.5
Ciclev10006471m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.4e-06 54.7 61 45.9
Lalb_Chr11g0073721 Lupinus albus HOM05D002165 ORTHO05D001531 3.4e-06 54.7 61 50.8
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 4.4e-06 54.3 43 60.5
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 5.8e-06 53.9 73 45.2
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 5.8e-06 53.9 73 45.2
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 5.8e-06 53.9 73 45.2
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 5.8e-06 53.9 71 40.8
MD13G1137300 Malus domestica HOM05D002165 ORTHO05D001531 5.8e-06 53.9 72 45.8
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 5.8e-06 53.9 73 45.2
Medtr4g124220 Medicago truncatula HOM05D002165 ORTHO05D001531 5.8e-06 53.9 67 46.3
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 7.6e-06 53.5 71 40.8


User provided reference genes

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