Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 0.0e+00 1230.3 633 100.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.9e-197 691.8 688 55.1
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.3e-145 519.6 705 44.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.5e-140 503.4 706 44.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.5e-140 502.3 706 44.3
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.6e-139 499.6 691 42.5
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 2.6e-134 483.4 703 41.5
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 3.4e-134 483.0 723 41.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.0e-133 481.5 689 43.4
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.9e-133 479.9 709 43.2
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 5.0e-133 479.2 692 41.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.4e-132 477.6 690 41.7
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 7.2e-132 475.3 692 42.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.2e-131 474.6 703 42.5
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.6e-131 474.2 597 46.4
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.8e-130 470.7 693 43.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.9e-125 453.4 725 41.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.5e-125 452.2 705 40.9
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.1e-124 451.4 697 40.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-124 450.3 697 39.7
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 6.1e-123 445.7 691 39.5
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 4.4e-121 439.5 696 39.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.5e-121 438.7 683 41.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.8e-120 436.0 702 40.6
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.8e-119 434.1 705 40.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.4e-119 433.7 712 38.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.5e-118 429.9 698 41.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.9e-117 426.8 728 38.5
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.9e-117 426.8 675 39.0
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.8e-117 426.4 686 39.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.2e-116 422.9 684 38.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 4.2e-116 422.9 684 38.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 7.2e-116 422.2 702 38.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.2e-115 421.4 678 38.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 6.1e-115 419.1 678 40.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.0e-115 418.7 709 40.2
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.8e-114 417.5 709 40.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.0e-114 416.8 769 34.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 5.2e-114 416.0 706 36.8
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.5e-113 412.1 713 38.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.3e-112 411.4 696 38.9
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.2e-112 410.6 688 38.4
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.8e-111 407.5 706 39.1
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 3.1e-111 406.8 685 40.6
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.2e-110 404.8 700 38.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.7e-110 403.7 709 39.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 5.9e-110 402.5 677 37.4
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.1e-108 398.3 679 38.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.5e-108 397.9 606 40.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-107 394.8 669 36.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 4.7e-107 392.9 677 35.7
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 6.1e-107 392.5 682 38.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 5.2e-106 389.4 612 38.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 8.8e-106 388.7 677 37.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.2e-105 388.3 678 35.7
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.6e-105 387.1 703 38.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.7e-104 384.4 694 37.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.8e-104 383.6 687 35.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.7e-104 383.3 696 37.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.9e-104 382.9 673 37.1
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.1e-103 380.2 687 35.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.1e-103 379.8 694 36.0
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.6e-102 377.9 690 36.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.0e-102 377.5 697 36.6
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.7e-102 377.1 564 38.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-101 374.4 698 36.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.3e-101 374.0 703 37.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 5.0e-101 372.9 698 35.8
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.6e-101 372.5 648 38.7
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.6e-101 372.1 696 37.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.6e-101 372.1 654 38.2
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 8.6e-101 372.1 707 35.2
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-100 371.3 719 36.9
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 7.3e-100 369.0 707 35.8
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 9.5e-100 368.6 702 35.5
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.5e-100 368.6 616 37.5
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-99 367.9 717 36.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.8e-99 367.1 696 35.5
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 8.0e-99 365.5 580 40.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 4.4e-97 359.8 566 39.6
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-96 357.5 601 38.6
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 4.9e-96 356.3 694 37.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.4e-95 354.8 631 35.8
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.8e-95 354.4 677 34.3
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.5e-94 350.1 703 35.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.3e-93 348.2 703 35.7
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.2e-91 341.7 619 36.3
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.7e-91 339.7 703 35.6
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.5e-89 334.7 706 34.6
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.4e-89 333.6 641 34.9
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 5.8e-89 332.8 575 37.2
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.8e-89 332.0 530 38.9
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.6e-86 324.7 556 38.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.8e-82 309.3 632 33.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.2e-80 304.3 482 40.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.4e-80 302.8 573 34.6
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.2e-79 298.9 467 37.9
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-78 298.5 487 37.0
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.1e-76 292.0 481 37.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 9.5e-76 288.9 474 39.9
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-74 285.4 660 33.5
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-73 282.0 456 38.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 3.4e-73 280.4 696 30.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 7.1e-71 272.7 470 35.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.3e-69 268.5 535 33.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 7.3e-68 262.7 692 29.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.6e-67 260.4 643 30.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.4e-66 257.7 696 29.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.4e-64 249.2 403 39.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.4e-63 246.5 614 30.1
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.3e-63 245.7 655 32.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.2e-62 245.4 483 34.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 5.1e-61 240.0 525 34.7
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.6e-61 239.6 661 28.6
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 8.7e-61 239.2 453 37.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-58 232.3 663 28.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-58 232.3 663 28.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.0e-58 230.3 352 38.4
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.7e-56 224.9 323 39.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.4e-55 221.1 471 34.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.3e-55 219.2 355 36.9
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.6e-51 208.4 426 36.4
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 6.9e-42 176.4 254 48.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 8.4e-40 169.5 215 41.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 5.5e-39 166.8 429 31.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.3e-36 157.1 168 48.8
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.3e-35 153.3 237 39.7
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 6.3e-35 153.3 237 40.5
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-33 148.7 373 33.2
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.4e-33 147.5 188 40.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.4e-33 147.5 242 43.0
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 7.6e-33 146.4 237 42.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-31 141.4 199 40.2
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.9e-29 134.0 205 36.1
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.1e-29 133.7 363 27.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.5e-28 131.3 136 49.3
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.2e-27 128.3 227 36.1
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 9.1e-26 122.9 188 35.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.4e-23 115.5 351 31.3
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 4.2e-23 114.0 355 29.9
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.2e-22 112.5 331 26.9
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.7e-21 106.7 131 46.6
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 5.7e-20 103.6 92 60.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.7e-19 102.1 105 53.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-17 95.5 84 54.8
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.2e-16 91.7 91 48.4
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 8.5e-16 89.7 67 55.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.2e-15 87.8 199 34.2
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 4.2e-15 87.4 343 29.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 9.4e-15 86.3 133 37.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.7e-14 84.0 90 48.9
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.8e-13 79.7 120 38.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.3e-12 77.8 65 52.3
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 7.7e-09 66.6 116 37.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-08 65.9 136 39.0
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 8.5e-08 63.2 123 34.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.5e-07 62.4 86 40.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 6.1e-06 57.0 63 41.3


User provided reference genes

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