Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 6.5e-190 668.3 460 100.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.9e-101 374.4 473 66.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 8.4e-97 359.0 475 60.2
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 8.1e-92 342.4 466 63.7
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.6e-90 337.4 460 63.5
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 4.5e-90 336.7 473 61.5
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.3e-89 335.1 384 65.1
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 3.8e-89 333.6 399 63.7
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 4.9e-89 333.2 462 63.0
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 2.4e-88 330.9 454 62.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 9.3e-88 328.9 455 58.9
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 6.0e-87 326.2 453 64.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.9e-85 321.2 473 57.5
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 3.3e-85 320.5 469 59.3
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 4.3e-85 320.1 469 58.6
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 4.0e-83 313.5 472 61.2
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.0e-82 311.2 448 59.8
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 3.8e-81 307.0 460 57.8
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.9e-81 306.6 445 58.4
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 4.9e-81 306.6 427 58.5
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-80 305.4 420 59.3
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 9.3e-80 302.4 431 59.6
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.6e-79 301.6 383 61.1
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.1e-79 301.2 412 60.7
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 4.6e-79 300.1 444 58.1
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 6.0e-79 299.7 414 62.8
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.0e-78 298.9 384 46.9
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.3e-78 298.5 462 54.8
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.0e-78 297.4 384 46.6
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.5e-77 295.0 377 67.6
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.9e-77 294.7 418 57.9
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 7.4e-77 292.7 468 58.1
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 4.8e-76 290.0 461 53.8
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 4.8e-76 290.0 384 60.2
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 6.3e-76 289.7 384 46.4
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 6.3e-76 289.7 384 46.4
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 6.3e-76 289.7 402 59.2
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.0e-74 284.6 449 55.0
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.0e-74 284.6 469 56.9
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 4.5e-74 283.5 378 61.6
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 5.9e-74 283.1 259 57.9
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 7.6e-74 282.7 253 58.1
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.0e-73 282.3 407 52.3
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 6.5e-73 279.6 416 61.1
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.2e-72 277.3 399 44.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.2e-72 276.9 261 56.3
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 7.2e-72 276.2 253 56.1
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 2.7e-71 274.2 254 56.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 5.1e-70 270.0 439 60.4
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 6.7e-70 269.6 252 56.0
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.1e-69 268.9 252 56.7
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.9e-69 268.1 418 58.6
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 2.4e-67 261.2 258 55.0
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 4.1e-67 260.4 423 61.9
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.0e-66 258.1 252 55.6
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 5.9e-66 256.5 349 67.3
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 3.8e-65 253.8 255 54.5
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 4.2e-64 250.4 372 56.5
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 7.2e-64 249.6 349 61.0
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.2e-63 248.8 417 51.6
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.1e-63 248.1 245 53.5
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 6.7e-62 243.0 393 64.4
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 6.7e-62 243.0 267 49.1
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.1e-61 242.3 167 66.5
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.3e-61 240.7 173 64.2
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 4.4e-61 240.4 346 57.5
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 2.2e-60 238.0 179 65.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 8.2e-60 236.1 263 49.4
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 1.8e-59 235.0 189 58.7
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.5e-58 231.9 391 54.0
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 3.4e-58 230.7 223 53.4
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.4e-58 230.7 373 53.4
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 8.5e-57 226.1 202 58.4
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.2e-55 222.2 175 60.6
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 6.7e-54 216.5 223 51.6
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 8.2e-52 209.5 219 49.3
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 4.0e-46 190.7 123 70.7
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.8e-43 181.8 169 53.3
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.6e-42 178.7 113 72.6
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 5.9e-42 176.8 144 56.2
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.3e-41 175.6 462 47.2
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 2.3e-38 164.9 175 46.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 9.1e-35 152.9 390 44.4
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.0e-33 149.4 92 75.0
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 4.4e-29 134.0 189 43.4
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.4e-27 129.0 241 61.4
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 2.4e-27 128.3 169 39.6
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.8e-23 114.8 207 82.6
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 4.7e-23 114.0 136 42.6
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 8.0e-23 113.2 99 51.5
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 8.0e-23 113.2 99 51.5
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.8e-22 112.1 72 70.8
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 9.2e-19 99.8 93 51.6
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 9.2e-19 99.8 93 51.6
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 9.2e-19 99.8 163 36.8
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.2e-18 99.4 106 41.5
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 2.7e-18 98.2 67 71.6
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.1e-16 92.8 83 51.8
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.5e-16 92.4 106 37.7
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 3.0e-09 68.2 102 38.2
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 4.3e-08 64.3 158 27.8
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 5.6e-08 63.9 163 27.0
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 3.6e-07 61.2 153 27.5
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 3.6e-07 61.2 145 30.3
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 3.6e-07 61.2 154 29.9
Migut.A00093 Erythranthe guttata HOM05D008470 ORTHO05D010644 4.7e-07 60.8 141 30.5
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 4.7e-07 60.8 144 25.0
Hma1.2p1_1112F.1_g258610 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 1.1e-06 59.7 181 24.9
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.4e-06 59.3 154 29.2
Hma1.2p1_1427F.1_g282910 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 1.8e-06 58.9 181 24.9
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 1.8e-06 58.9 166 23.5
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 2.3e-06 58.5 155 27.1
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 2.3e-06 58.5 155 27.1
Atru.chr11.1126 Acer truncatum HOM05D007202 ORTHO05D009125 4.0e-06 57.8 162 26.5
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 4.0e-06 57.8 155 26.5
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.0e-06 57.8 137 24.8
HanXRQChr06g0182651 Helianthus annuus HOM05D008470 ORTHO05D010644 5.2e-06 57.4 148 30.4
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 8.9e-06 56.6 178 25.3


User provided reference genes

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