Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.5e-92 342.8 171 100.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 8.7e-32 141.0 186 47.3
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.5e-31 140.2 197 47.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.8e-30 136.0 193 47.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.4e-29 132.9 186 44.6
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-28 130.6 190 48.4
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 4.5e-28 128.6 185 45.4
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.5e-28 128.6 175 49.1
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.5e-28 128.6 175 49.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.6e-28 127.9 191 45.5
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 7.6e-28 127.9 187 46.5
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.6e-28 127.9 175 49.1
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.2e-27 126.3 184 40.8
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 6.4e-27 124.8 188 42.0
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 5.4e-26 121.7 191 46.1
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 5.4e-26 121.7 186 39.8
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 5.4e-26 121.7 188 44.7
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.3e-26 120.9 193 45.6
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.2e-25 120.6 198 42.9
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.2e-25 120.6 187 47.6
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-25 120.6 186 39.8
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.6e-25 120.2 187 42.2
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.7e-25 119.4 193 40.4
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 3.5e-25 119.0 184 40.2
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 4.6e-25 118.6 190 43.7
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 6.0e-25 118.2 197 41.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.0e-24 117.5 188 42.6
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.3e-24 117.1 196 45.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.8e-24 116.7 180 42.8
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.3e-24 116.3 190 41.6
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 3.0e-24 115.9 190 40.5
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 3.0e-24 115.9 190 40.5
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.9e-24 115.5 187 43.9
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 3.9e-24 115.5 190 45.3
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 6.7e-24 114.8 190 38.9
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 6.7e-24 114.8 189 41.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 8.7e-24 114.4 182 42.3
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.1e-23 114.0 183 43.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.5e-23 113.6 194 41.8
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.5e-23 112.8 194 37.6
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.3e-23 112.5 196 39.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 4.3e-23 112.1 185 43.8
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.3e-22 110.5 185 42.7
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.3e-22 110.5 192 38.0
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.6e-22 110.2 191 39.3
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.6e-22 110.2 194 42.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.1e-22 109.8 187 39.0
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-22 109.8 187 39.0
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-22 109.8 187 39.0
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.1e-22 109.8 190 41.6
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.7e-22 109.0 196 41.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.7e-22 109.0 189 42.9
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 4.8e-22 108.6 178 46.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.1e-22 107.8 192 40.6
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 8.1e-22 107.8 200 42.0
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 8.1e-22 107.8 172 41.9
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.1e-21 107.5 184 40.2
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.4e-21 107.1 184 40.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.4e-21 106.3 203 40.4
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.4e-21 106.3 192 40.6
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 3.1e-21 105.9 192 39.1
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.1e-21 105.9 180 45.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.1e-21 105.9 197 40.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 5.3e-21 105.1 179 42.5
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 5.3e-21 105.1 186 40.3
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.9e-21 104.8 181 42.5
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.0e-21 104.4 185 40.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.2e-20 104.0 187 42.2
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.5e-20 103.6 183 43.2
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.5e-20 103.6 200 39.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.0e-20 103.2 202 38.1
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.0e-20 103.2 178 41.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.6e-20 102.8 184 41.8
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.4e-20 102.4 189 39.2
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-20 102.1 184 41.8
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 7.6e-20 101.3 205 37.1
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 7.6e-20 101.3 178 38.8
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.6e-20 101.3 206 37.9
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.7e-19 100.1 194 43.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.2e-19 99.8 194 40.2
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.9e-19 99.4 196 39.8
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.8e-19 99.0 179 39.7
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 8.4e-19 97.8 185 38.4
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 8.4e-19 97.8 185 38.4
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.4e-19 97.8 194 40.2
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-18 97.4 189 38.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.1e-18 97.4 190 40.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.9e-18 96.7 188 38.8
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.9e-18 96.7 172 40.7
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.9e-18 96.7 192 39.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.5e-18 96.3 188 43.6
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.5e-18 96.3 175 42.9
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.2e-18 95.9 189 37.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.2e-18 95.9 189 37.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.2e-18 95.9 189 37.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 4.2e-18 95.5 221 38.0
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 4.2e-18 95.5 180 41.7
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 4.2e-18 95.5 196 36.2
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 5.5e-18 95.1 188 38.3
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 5.5e-18 95.1 186 37.1
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 5.5e-18 95.1 208 36.5
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 9.3e-18 94.4 216 37.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 9.3e-18 94.4 216 37.0
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 9.3e-18 94.4 190 38.9
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.6e-17 93.6 188 42.0
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.6e-17 93.6 194 39.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.7e-17 92.8 205 36.1
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.5e-17 92.4 202 36.1
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.5e-17 92.4 187 35.8
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.5e-17 92.4 186 40.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.0e-17 91.7 186 40.3
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.3e-16 90.5 177 37.3
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 2.3e-16 89.7 193 36.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 2.3e-16 89.7 193 36.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 8.7e-16 87.8 175 40.6
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 8.7e-16 87.8 206 36.4
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.7e-16 87.8 187 38.0
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 8.7e-16 87.8 202 38.1
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.5e-15 87.0 189 38.6
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.9e-15 86.7 207 34.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.5e-15 86.3 192 36.5
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.5e-15 86.3 219 35.6
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.5e-15 86.3 192 36.5
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.5e-15 86.3 191 34.0
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 5.7e-15 85.1 189 35.4
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 9.6e-15 84.3 210 33.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.2e-14 81.3 188 38.3
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 8.2e-14 81.3 192 33.3
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.4e-13 80.5 181 39.2
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.4e-13 80.5 177 36.7
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.4e-13 79.7 189 38.1
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.5e-12 77.0 150 37.3
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.7e-11 73.6 179 34.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.9e-10 70.1 176 33.5
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 2.7e-09 66.2 77 50.6
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.9e-08 62.4 93 40.9
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 3.9e-08 62.4 75 50.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.9e-08 62.4 205 33.7
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.7e-08 61.6 80 46.2
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-06 57.4 77 48.1
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.3e-06 57.4 38 71.1
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 6.3e-06 55.1 36 72.2


User provided reference genes

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