Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.4e-122 443.0 227 100.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 6.8e-109 397.5 222 89.2
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.1e-106 390.2 227 85.0
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.4e-106 389.8 227 85.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.4e-106 389.0 222 86.5
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 4.6e-105 384.8 214 88.8
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.6e-105 384.8 216 88.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.5e-103 379.8 224 83.0
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.3e-103 378.3 228 82.5
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.6e-103 377.9 228 82.5
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 7.3e-103 377.5 223 84.3
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.2e-102 376.7 221 83.7
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.6e-102 376.3 214 86.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.8e-102 375.6 225 83.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 3.6e-102 375.2 222 83.3
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 4.7e-102 374.8 222 83.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 4.7e-102 374.8 222 83.3
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 6.2e-102 374.4 230 81.3
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 8.1e-102 374.0 222 82.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 8.1e-102 374.0 230 82.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 8.1e-102 374.0 230 81.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 8.1e-102 374.0 225 83.6
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.1e-101 373.6 222 85.1
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.4e-101 373.2 225 82.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.8e-101 372.9 218 83.9
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.4e-101 372.5 224 80.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.4e-101 372.5 225 83.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.4e-101 372.5 227 83.3
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.4e-101 372.5 222 82.0
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 5.2e-101 371.3 225 81.3
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 5.2e-101 371.3 218 83.0
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 5.2e-101 371.3 225 82.2
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.2e-101 371.3 225 81.3
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 6.8e-101 370.9 224 82.6
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.6e-100 369.0 227 79.3
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.4e-100 368.6 217 83.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 4.4e-100 368.2 218 82.6
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 5.8e-100 367.9 216 83.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 5.8e-100 367.9 218 82.1
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.7e-99 366.3 223 80.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 216 82.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.4e-98 363.2 221 81.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.9e-98 362.8 217 83.4
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.9e-98 362.8 216 81.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.2e-98 361.7 262 71.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.4e-98 361.3 219 82.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 7.1e-98 360.9 268 70.1
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.2e-97 360.1 227 76.2
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.6e-97 359.8 223 82.1
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.1e-97 359.4 224 80.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.1e-97 359.4 227 80.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.6e-97 358.2 224 79.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.0e-96 357.1 220 81.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.3e-96 356.7 224 79.5
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.7e-96 356.3 232 78.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 5.1e-96 354.8 222 80.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.1e-95 353.6 223 78.5
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.1e-95 353.6 223 78.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.9e-95 352.8 225 78.2
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.3e-95 352.1 225 78.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 5.6e-95 351.3 222 77.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-94 350.1 225 77.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-94 349.7 225 77.3
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-94 349.4 217 78.3
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.1e-94 349.4 227 76.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.6e-94 348.6 225 76.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 3.6e-94 348.6 220 79.1
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 6.2e-94 347.8 225 75.6
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 6.2e-94 347.8 225 75.6
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.2e-94 347.8 219 79.0
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.1e-93 347.1 220 78.2
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-93 346.3 216 77.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.1e-93 345.5 225 77.8
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.0e-93 345.1 225 77.8
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 4.4e-92 341.7 214 78.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.4e-92 341.7 219 76.7
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 5.8e-92 341.3 217 77.0
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 9.9e-92 340.5 218 75.2
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 9.9e-92 340.5 220 75.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.2e-91 339.3 224 75.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.9e-91 339.0 215 75.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.8e-91 338.6 219 76.3
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 3.2e-90 335.5 219 74.9
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-88 330.1 225 74.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.9e-88 328.6 222 74.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 8.7e-88 327.4 212 73.6
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 8.7e-88 327.4 213 75.6
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.5e-87 326.6 222 73.9
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.6e-87 324.7 273 63.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 9.6e-87 323.9 222 73.9
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-86 323.2 225 72.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.6e-86 323.2 225 72.9
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.2e-86 321.2 224 72.8
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-85 320.5 222 71.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.1e-85 320.5 222 71.6
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.4e-85 320.1 220 72.3
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.4e-85 320.1 189 83.6
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.8e-85 319.7 222 71.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.4e-85 319.3 222 71.2
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 4.0e-85 318.5 220 71.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 4.0e-85 318.5 222 73.9
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.0e-85 318.5 229 68.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 9.0e-85 317.4 227 68.3
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.2e-84 317.0 220 70.9
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.0e-84 316.2 226 69.5
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.1e-81 306.2 220 67.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-80 303.5 214 69.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.6e-79 297.4 217 66.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.1e-78 296.2 217 67.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.4e-77 292.7 212 65.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.5e-76 290.0 212 67.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 7.6e-76 287.7 210 66.2
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.0e-75 287.3 212 67.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.5e-73 278.9 177 75.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.0e-72 275.8 180 72.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.5e-67 258.1 199 64.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.7e-63 245.0 141 84.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.1e-57 224.9 128 85.9
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.7e-54 216.9 132 82.6
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 8.2e-54 214.5 133 81.2
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.4e-53 213.8 122 85.2
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.4e-53 213.8 236 50.4
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.4e-53 213.0 125 82.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.8e-48 196.8 155 65.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.5e-42 175.3 124 68.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.0e-40 169.1 112 73.2
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 9.7e-39 164.5 110 75.5
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.3e-38 164.1 130 67.7
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.6e-36 156.4 95 80.0
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 5.9e-36 155.2 92 82.6
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 4.0e-32 142.5 211 40.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 4.4e-31 139.0 164 43.9
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.8e-31 137.9 90 71.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-30 137.1 95 68.4
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.8e-29 133.7 189 38.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 5.4e-29 132.1 189 39.2
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.2e-28 131.0 219 37.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.0e-28 130.2 181 38.7
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.0e-27 127.9 77 77.9
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.9e-27 126.3 202 40.1
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.4e-24 117.5 94 61.7
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 4.0e-24 115.9 73 78.1
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 2.6e-23 113.2 216 34.7
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.6e-23 113.2 75 76.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.4e-23 112.8 68 75.0
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 5.7e-23 112.1 195 37.9
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 8.3e-22 108.2 170 35.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.1e-21 107.8 65 81.5
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.8e-21 107.1 97 59.8
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.1e-21 106.3 209 33.5
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 9.1e-21 104.8 88 60.2
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.1e-18 97.8 63 74.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 4.3e-18 95.9 53 84.9
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 9.5e-18 94.7 63 73.0
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-17 94.4 58 77.6
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 4.0e-16 89.4 59 78.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 8.9e-16 88.2 70 61.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.4e-13 80.1 50 76.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.0e-12 77.0 68 54.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 6.6e-11 72.0 94 48.9
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 8.6e-11 71.6 57 63.2
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.0e-08 64.7 68 47.1
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.4e-08 64.3 66 50.0
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.8e-08 63.9 65 47.7
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 2.3e-08 63.5 64 48.4
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 4.0e-08 62.8 57 52.6
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 5.2e-08 62.4 59 50.8
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.6e-07 60.1 39 71.8
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 1.7e-06 57.4 48 58.3


User provided reference genes

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