Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 0.0e+00 2196.4 1115 100.0
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1274.6 1160 58.4
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1209.9 1117 56.6
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1171.0 1135 54.6
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1150.6 1125 54.2
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1137.9 1141 52.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 1116 53.9
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1130.5 1121 53.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1125.2 1131 52.6
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1117.4 1113 53.1
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1105.9 1131 51.6
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1102.8 1083 52.4
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1093.2 946 58.6
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1092.8 1170 50.4
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1084.3 1110 52.3
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1081.6 1113 51.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1080.9 1113 50.9
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1077.0 1143 49.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 7.6e-312 1074.3 1119 50.5
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.5e-311 1072.8 1052 53.2
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.2e-307 1060.1 1120 50.8
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 7.3e-305 1050.8 1159 48.6
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 8.1e-304 1047.3 1065 52.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 1.4e-303 1046.6 1126 50.1
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 1.7e-301 1039.6 1101 50.2
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 2.9e-301 1038.9 1047 51.9
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 2.9e-301 1038.9 1100 50.2
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 3.7e-301 1038.5 1078 50.9
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 3.7e-301 1038.5 1078 50.9
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 6.4e-301 1037.7 1052 51.1
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.4e-300 1036.6 1041 51.2
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 1.2e-299 1033.5 1102 49.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.1e-299 1032.7 1039 52.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 2.7e-299 1032.3 1107 49.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 4.6e-299 1031.6 1071 50.8
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 7.8e-299 1030.8 1120 49.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 6.6e-298 1027.7 1054 51.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.1e-297 1026.9 1077 50.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 2.8e-296 1022.3 1063 51.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.6e-296 1021.9 1149 48.5
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 4.7e-296 1021.5 1134 50.4
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.8e-295 1019.6 1160 48.8
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.8e-295 1019.6 969 54.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.4e-292 1010.0 1067 49.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.6e-291 1006.5 1149 48.7
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-289 1000.3 1044 51.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.5e-289 1000.0 866 59.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 9.6e-289 997.3 963 53.7
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.0e-286 989.6 1011 49.5
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 2.9e-285 985.7 1101 48.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.4e-284 983.4 1090 48.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.3e-282 976.9 1049 49.4
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 2.3e-282 976.1 932 53.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.1e-281 973.8 1054 47.8
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.3e-280 970.3 1037 48.9
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 2.8e-280 969.1 1043 49.8
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.4e-279 966.1 1022 48.9
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.6e-275 953.4 1087 47.8
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 2.1e-275 953.0 1042 49.1
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 2.7e-275 952.6 1095 47.0
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.8e-271 939.9 885 56.0
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.5e-270 936.8 1056 47.9
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.6e-270 936.0 1023 48.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 3.4e-270 935.6 1038 48.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.8e-269 932.2 973 49.4
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 3.8e-269 932.2 1056 47.6
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 4.9e-269 931.8 1055 47.5
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 8.4e-269 931.0 1038 48.4
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.4e-268 930.2 1052 46.7
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.9e-268 929.9 974 49.4
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 5.5e-268 928.3 1059 47.1
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 9.6e-265 917.5 1050 46.5
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 4.8e-264 915.2 1106 45.9
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 6.2e-264 914.8 1037 47.4
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.7e-258 894.8 916 51.3
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-254 883.6 1114 45.2
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.6e-251 872.1 899 50.4
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.5e-249 867.1 1082 44.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.8e-248 862.8 783 55.0
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.0e-246 856.7 858 52.9
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.2e-240 836.6 940 46.5
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.8e-240 835.5 904 50.1
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 4.8e-240 835.5 1010 45.3
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.1e-239 832.8 854 51.2
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 4.7e-235 818.9 1106 41.6
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.9e-229 799.7 1105 41.6
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.6e-225 786.6 1055 43.3
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.0e-218 764.6 744 54.4
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.2e-214 751.1 771 50.7
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 6.4e-208 728.8 739 51.4
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 6.8e-202 708.8 1094 38.5
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.1e-199 701.4 691 52.2
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.6e-193 680.2 552 62.0
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 5.8e-185 652.5 647 53.3
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-177 627.9 634 50.9
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 6.9e-170 602.4 643 47.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 2.6e-161 573.9 600 49.8
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 2.2e-128 464.5 485 49.5
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.4e-116 423.7 389 56.3
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.7e-113 414.5 404 53.7
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.8e-99 367.9 394 48.5
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.0e-85 320.9 324 49.7
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 3.2e-82 311.2 336 47.3
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.6e-68 263.5 967 26.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.7e-67 262.3 221 58.8
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 7.8e-65 253.4 218 56.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-60 238.0 284 47.5
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 3.6e-54 218.0 196 56.6
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 6.0e-49 200.7 196 54.1
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.5e-47 195.3 196 52.0
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.6e-46 192.6 196 52.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 7.6e-44 183.7 185 51.9
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 7.6e-44 183.7 206 46.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.2e-41 176.4 190 44.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 7.9e-41 173.7 232 40.1
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.5e-36 159.5 161 44.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.0e-36 159.1 904 22.6
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.6e-36 158.7 128 57.8
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 6.5e-35 154.1 126 60.3
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.5e-34 151.0 125 60.0
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.3e-31 141.7 115 58.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 9.7e-31 140.2 126 56.3
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-30 139.8 339 28.3
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-27 129.8 1031 21.6
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.6e-25 122.9 496 26.6
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.5e-23 115.5 459 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.1e-17 94.4 552 24.5
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 6.1e-17 94.4 71 64.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.5e-15 89.7 83 48.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.5e-15 89.7 83 50.6
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.8e-14 85.5 321 28.0
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.4e-13 82.4 133 38.3
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 4.5e-12 78.2 95 41.1
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 5.9e-12 77.8 58 62.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.3e-11 76.6 58 62.1
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-11 76.3 216 28.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.2e-11 75.9 108 40.7
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.2e-10 70.9 356 23.0
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.7e-09 68.9 135 31.1
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.0e-09 67.4 223 26.5
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.4e-08 66.6 57 52.6
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.8e-08 66.2 70 48.6
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 8.8e-08 63.9 74 45.9
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 8.8e-08 63.9 411 21.9
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 3.3e-07 62.0 131 35.1


User provided reference genes

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